AT5G24220.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.996 What is SUBAcon? |
|
||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : Lipase class 3-related protein | ||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
Computational Description (TAIR10) |
Lipase class 3-related protein; FUNCTIONS IN: triglyceride lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: Lipase class 3-related protein (TAIR:AT5G24180.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr5:+:8225861..8227551 | ||||||||||||||||||||||||||||
Molecular Weight (calculated) | 42095.40 Da | ||||||||||||||||||||||||||||
IEP (calculated) | 7.66 | ||||||||||||||||||||||||||||
GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||
Length | 376 amino acids | ||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MGRGSLRKLI GGGGEMASDS DRDVFSIFGP FHLTSIDWTN SYHRTSVASS LVNGVYTMER DKQEKRVGSE SRAMPWWDFF NFSLVETLID DYDSSIYGAV 101: FEYKLSNLCQ NTSHAKAPPR YVIAFRGTIL ESDTWMTDVK HNLKFSFNTL HEGGRSLQAI RAIRSMVDKH SEAAIWLAGH SLGAALVLLA GKTMTSFGFL 201: LESYIFNPPI SCIPLEQLPG GKKIKGVFQF TKTVVKATVA MVLTDLQVQE DDPKTASWIP YLYVNPADPI CAGYIDYFRH KTFMSEIGAS HIERIGAGKS 301: VRSLLMGKSS SSDLSTEPLH LLPSADMIVN KNKPTKVMTA HGLHQWWERD SAMRENWESC CIRPYPDGKL EQLTIQ |
||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)