AT5G24040.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.976 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF295) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF295); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT2G16290.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:8126045..8127336 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43797.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.91 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||
| Length | 373 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVKWSELPPE ILHLISLKID NPFDLIHFRS VCSFWRSSSL LKFRHMTSLR CPLPLDPGGC GDDCHILSSR VYLLKCPNRD RPQYWMFKLQ AKENGEVVLH 101: SLFLRRNSSA YGCLYPSLSI DLLNCQIFEL AQEHVACYSE WFELFECISK CEERIGFMGL NREKNEYMIL GKLSFNGLAM YRSVDNRWTE LEITPDSFFE 201: GIVPFKGKFY AIDRTGKTTV VDPTLEVNTF QRSRPCDKTR KRWLLMTGDK LILVEMCTKS RYDFHIPNIR EKKIWFEISE LNEERNDWDQ VEDMDGRVLF 301: LEHYCTFSCL ATEIPGFRAN SIIFMDLWGG SNSYELESIL VYEFNEKGVR SLRDKLEYIE LFPFPPGWVI SNG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)