AT5G23980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ferric reduction oxidase 4 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a ferric chelate reductase that is expressed at low levels in roots,shoots and cotyledons, but not flowers. Its transcription is regulated by FIT1. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ferric reduction oxidase 4 (FRO4); FUNCTIONS IN: ferric-chelate reductase activity; INVOLVED IN: oxidation reduction, N-terminal protein myristoylation; LOCATED IN: endomembrane system, integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Ferric reductase, NAD binding (InterPro:IPR013121), Cytochrome b245, heavy chain (InterPro:IPR000778), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130); BEST Arabidopsis thaliana protein match is: ferric reduction oxidase 5 (TAIR:AT5G23990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:8098167..8101282 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 80255.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.80 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.18 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 699 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGNMRSLVKT LMVVLFLGWI LVWIMISTNL FKSKWTPKLS KYLNTTYFGP QGTNLVLLTV PMMFIAVLSC VYLHIQKKPT QPQREWKLKR IMGRVIMVMN 101: PLGIVTATEL TFSLLFVALL AWSLYNYLYL SYHVHLHNDD NAKIWQAKFR AFGLRIGYVG NICWAFLFFP VTRASTILPL VGLTSESSIK YHIWLGHVSN 201: FCFLVHTVVF LIYWAMINKL METFAWNPTY VPNLAGTIAM VIGIAMWVTS LPSFRRKKFE IFFYTHHLYG LYIVFYVIHV GDSWFCMILP NIFLFFIDRY 301: LRFLQSTKRS RLVSARILPS DNLELTFSKT PGLHYTPTSI LFLHVPSISK IQWHPFTITS SSNLEKDTLS VVIRRQGSWT QKLYTHLSSS IDSLEVSTEG 401: PYGPNSFDVS RHNSLILVSG GSGITPFISV IRELISQSQN KSTKLPDVLL VCSFKHYHDL AFLDLIFPLD MSASDISRLN LRIEAYITRE DKKPETTDDH 501: RLLQTKWFKP QPLDSPISPV LGPNNFLWLG VVILSSFVMF LLLIGIVTRY YIYPVDHNTG SIYNFSYRGL WDMFLGSACI FISSSVVFLW RKKQNKEGDK 601: EFKNQVQSVE FQTPTSSPGS WFHGHERELE SVPYQSIVQA TSVHFGSKPN LKKILLEAEG SEDVGVMVCG PRKMRHEVAK ICSSGLAKNL HFEAISFNW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)