AT5G23950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.923 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Calcium-dependent lipid-binding (CaLB domain) family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT1G07310.1); Has 7173 Blast hits to 1801 proteins in 194 species: Archae - 14; Bacteria - 856; Metazoa - 2022; Fungi - 1141; Plants - 806; Viruses - 64; Other Eukaryotes - 2270 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:8082789..8083448 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 23356.50 Da | ||||||||||||||||||||||||
| IEP (calculated) | 3.96 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.61 | ||||||||||||||||||||||||
| Length | 219 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSHGREVEV TISSAKDIKN VNWRNGPNKP YAVVWIDPKF KSSTRVDEDG NTCTTWNETF VIALPPANDD DDKVYINIVH AGREENTKPL IGSAHLSLRD 101: VIDDVGFGVP FMKTLKLKRP SGRPQGKLDV TVTVRETPGS NYALPYGDPY APEKGSKFGG MGTGLAVGAV AGVLGGVALA EGLEAVEGDE DDDDDDDAAA 201: AAAADDDDDD DDDDDDDDE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)