AT5G23780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.966 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DOMAIN OF UNKNOWN FUNCTION 724 9 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DOMAIN OF UNKNOWN FUNCTION 724 9 (DUF9); FUNCTIONS IN: RNA binding; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 8 (TAIR:AT5G23770.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:8017291..8019026 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48447.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.22 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.64 | ||||||||||||||||||||||||||||
| Length | 426 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFSPGTTVEV SSKINNKEVV WVPAVVIKEF KEDDEYKYIV RVYDKSFSCK GNKAARLNKT VDLCSLRPTP PSISVEEYQL KEYVEVFHDG MGWRQGRVMK 101: IQERVMLSQG RVMVSQGRVM GNLSQKCYIV LLEATKKQIS FKQSDLRPLQ VWEDGVWKML QTRESSLTQG SGDETSDSVR NANESDPPVT PRPGITTPPL 201: KQIEAETQRK TLPRNQNASV NDSTRENENS EDINRKRKRE ESLCSDASVE DTTMTLPFEK KLSIWKTLES VETVPQSPHF SPLVETREDC REMSAVGMML 301: TFPCLLEEVK SLQHDNSISS LISLSNNFCE LEKHGFNVKA PQSRISKLLS LRGKQSMKMD ELKGAEKVTA EKESIKIENE RKILELQRLN EEVDKEIAQS 401: KSCAAKIVQQ LEDVELQFQT TASAPW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)