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AT5G23180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.981
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related transcriptional regulator (TAIR:AT4G01260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
DNASU:832382EMBL:AB007648EMBL:CP002688EnsemblPlants:AT5G23180
EnsemblPlants:AT5G23180.1entrez:832382GeneID:832382Gramene:AT5G23180.1
HOGENOM:HOG000152564KEGG:ath:AT5G23180PhylomeDB:Q9FMY2Proteomes:UP000006548
RefSeq:NP_197709.1TAIR:AT5G23180UniGene:At.54957UniProt:Q9FMY2
Coordinates (TAIR10) chr5:+:7801474..7801890
Molecular Weight (calculated) 15510.20 Da
IEP (calculated) 4.47
GRAVY (calculated) -0.78
Length 138 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPKQPEKIE NPPMASAPSS EKESGSTENE YGSSGEETNS SDDEHEEARD NVISTPLSFG QELVSFFKVE NLTYLGIDEA KWIAYWDMVK DGPKKREVEK
101: QLKKMLAMQM ELFMMRTGFT KEVATVLFKQ DNASSSGK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)