AT5G23110.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Zinc finger, C3HC4 type (RING finger) family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: zinc ion binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), ATPase-like, ATP-binding domain (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: Transmembrane Fragile-X-F-associated protein (TAIR:AT1G73950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:7758307..7775509 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 527280.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.35 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.08 | ||||||||||||||||||||||||||||||||||||
| Length | 4706 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDSLLLEDFG QKVDLTRRIR EVLLNYPEGT TVLKELIQNA DDAGATKVRL CLDRRVHGSG SLLSDSLAQW QGPSLLAYND AVFTEEDFVS ISRIGGSGKH 0101: GQAWKTGRFG VGFNSVYHLT DIPSFVSGKY VVLFDPQGAY LPNISAANPG KRIDYVGSSA LSQYKDQFLP YCAFGCDMRS PFNGTLFRFP LRNTEQAASS 0201: RLSRQAYFED DISLMFDQLF EEGVFSLLFL KCVLSIEMYT WDDGDSEPKK LYSCSVSSPN NDTVWHRQAV LRLSKTSISG DREMDAFTLE FLSESEKGNQ 0301: TKRRTDRFYI VQTMASASSK IGLFAATASK EYDIHLLPWA SVAACISDDS SENNILKLGH AFCFLPLPVR TGLTVQVNGY FEVSSNRRGI WYGEDMDRSG 0401: KVRSAWNRLL LEDVVAPSFA RLLLCLREVL DSRDSYFSLW PSGSFEAPWS ILVEQIYKNI CNAPVLFSDL DGGKWVSPAD AYLHDEEFSG SKDLGDALLQ 0501: LEMPIVCLPR LVFDMLLKHP SFLLPKVVTP DRVRNFLKEC KTLSALKKSL KLVLLEYCLD DLTDDSVCTQ ASNLKLLPLA NGDFGFFSGR TGSVSYFICD 0601: ELEHMLLQKV YDRVIDKNIP PPLYTRLFAI AESRTANVAI FSIHNLLQLF PRLVPAEWKH RSKISWHPES NRDHPSSSWF VLFWQYLDKR CQSLSLFCDW 0701: PILPSTSGYL YIASPQSKLI NAEKLPAAVR NVLEKIGGKI LNNNIKVEHS DLSSFVSDAS YTGVLESIFD AASSDLDGVQ NLIYDLNAQE KDELRSFLLD 0801: PKWHIGHQIG DLYLRICKIL PIHRIYGETS AQESKYSDLV NPPKHLPPLD VPACLLGCEF ILCCQGSEED VLSRYYGIER MRKSNFYRQN VFNRIEVLQP 0901: EIRDQVMISI LQDLPQLCLE DRLLREELQN LEFVPTVNGP LKRPSVLHDP RNEELYALLE DSDCFPASGF QGSAILDMLQ GLGLKTTVSP ETILESARLV 1001: ERLMHKDLEK AHSRGKVLFS FLEVNAVKWL PDQSSEDDGA INRIFSRAAT AFRPRNLTCN LVKFWSELKM ICWCPVLVSA PFQTLPWPVV TSTVAPPKLV 1101: RPKTDMWLVS ASMRILDGEC SSTALAYNLG WLSHPGGSAI AAQLLELGKN NEILIDQVLR QELALAMPKI YSILARLLGS DEMDIVKAVL EGSRWIWVGD 1201: GFATLSEVVL DGPLQLVPYI RVIPTDLAVF RGLFVELGVR EFLTPSDYAD VLCRIAVRKG TSPLDPQEIR AAVLIAQQLA EAQFLDKVTI YLPDVSGRLF 1301: PSSDLVYNDA PWLTASDNLN SSFSAESTML LNAKRTMQKF VHGNISNEVA EKLGVRSLRR VLLAESADSM NFSLSGAAEA FGQHEALTTR LKHILEMYAD 1401: GPGILFELVQ NAEDAGASEV TFLLDKTHYG TSSLLSPEMA DWQGPALYCF NNSVFTQQDM YAISRIGQAS KLEKPFAIGR FGLGFNCVYH FTDIPGFVSG 1501: ENIVMFDPHA NHLPGISPTH PGLRIKFAGR YILDQFPDQF APFLHFGCDL EHTFPGTLFR FPLRNASVAP RSHIKKETYA PEDVLSLFTS FSGVVSEALI 1601: FLRNVKTVSI FTKEGAGHEM QLLHRVCKDH NVGQDTEPKP SSQVFSLLDE NIFAGMNKDQ LLKKLSNTVV KDLPYKCQKI VVTEQDSSGC ILHGWITGEC 1701: LNAGVSKKNL NLPEMSHKLI PWASVAVHIN SVKNENVEDL AASISNIFGP STISIQNRRN FGGRAFCFLP LPITTGLPAH INAYFELSSN RRDLWFGNDM 1801: AGDGKVRSDW NLYLIEEVVV PAYGHLLEKI ASELGPCDLF FSVWPVTLGT EPWASLVRKL YSFIANNGLR VLYTKARGGQ WISTKQAIYP DFSFPKADEL 1901: VDVLADAGLP VINISKTVAE RFGEACSSLH LMTPQLLRTL LTRRKREFRD RNGLALALEY CLLDLKVPFL ADLLYGLPLL PLADGSFTTF NKNGTAERIF 2001: FAEEIGYELL KDSLPHQLVD REVPEGVYSK LLAVAQSGES CICLLSCNLL EKLFFKLLPA DWHLSEKILW TPGQRGHPTV EWIRVLWSYL KLSCDDLSVF 2101: SKWPILPVED GCLMQLILNS NVIRDDGWSE NMSSLLLKCG CRFLNRELPV EHPQLETFVQ PPTATGILNA LLAISGGHEN IKGIFLNVSE GELHELRNFI 2201: LQSKWFSGGH MNEVHFETIK HLPIFESYRS RKLVSLNCPV KWLKPDGIRE DLLDDDFVRL DSERERTIFK RYLQIKEPSK MEFYKACVLN RMSEFLSQQE 2301: ALLAILHDLN DLVVADVSLQ CAISTTPFVL AANGLWQQPS RLYDPRVPAL QELLHKEVYF PSEKFSDSKI LDALVGLGLR TTLDCSTYLD AARSVSMLHD 2401: LGDLEASRYG RRLLFHIKTL SIKLSSKTGE ANHDESQNIM SITSEDSFDG ETYPEYETET SYLGSLLTQQ SEDEFWCQLR SIPWCPICLD PPIEGIPWLE 2501: SSNLVASPDR VRPKSQMFLV SATMHLLDGE CQSSYLHQKL GWMDCLTIDI LCRQLIEISK SYKEQKSRSS VNPEFESMLQ SQIPLLYTRL QELSRENDFL 2601: ALKSALSGVP WVWLGDDFVS ADVLSFDSPV KFTPYLYVVP SELSDFKELL LELGVRLSFD AADYMNTLQH LQNDIKGSQL TDEQINFVLC VLEAVADCFS 2701: EVSSDSDNNS VLVPDSAGFL VPLEDLVYND APWVDSSSLS GKRFVHPSIN SDMANRLGIQ SLRCISLVDN DITQDLPCMD FTKLKELLSL YASKDFLLFD 2801: LLELADCCKV KKLHIIFDKR EHPRKTLLQH NLGEFQGPAI VAILEGVTLT REEICSLQLL SQWRIKGETL NYGLGLLSCY FMCDLLSIVS GGYFYMFDPQ 2901: GATLSASTTQ APAGKMFSLI GTNLVERFSD QFNPMLIGQD KAWSLTDSTI IRMPLSTEIL KDGFEAGLDR VKQISDQFLE NASRILIFLK SVSQVSFSTW 3001: EQGNAQPHQD YTLHIDSASA IMRNPFAEKN LKTSKLSRIF GSSNSGVKSR IIEVNLHIGE NKLLDRWLVV LSKGSGQSQN MARGRKYLAY NLTPVAGVAA 3101: HVSRNGRPVD VHAASPIMSP LPLSGSVNLP VTILGCFLIR NNCGRFLFKN KNERAMSEPQ LDAGDILIDA WNKELMSCVR DSYIEIVVEM ERLSREHSSS 3201: STESSTARQL ALSLKAYGHQ LYSFWPRSNQ HDDAIEAEVL KPEWECLVEQ VIRPFYARVA DLPLWQLYSG SLVKAEEGMF LTQPGSEVAV NLLPLTVCSF 3301: VKEHYPVFSV PWELLAEVQA VGIPVREVKP KMVRVLLRKS SASIDLRSVD TFIDVLEYCL SDIQFIEALN PEEANMDEGN STSTSSSMST QAQAGSSDAF 3401: EMMTSLGKAL FDFGRVVVED IGRTGDSIGQ RISNNRYSNA DPRFLSAVNE LKGLPCPTAT NHLARLGISE LWLGNKEQQA LMLPVSARFI HPKVFERSSL 3501: ADIFLKSSVQ AFLKLRSWSL PLLASNMKYL FHDHWVSYIS ESNSVPWFSW ESTSSSSDDS GPSPEWIQLF WKNFNGSADE LSLFSDWPLI PAFLGRPILC 3601: RVRERHLIFF PPPALQPVSR SGTDMHQTDS DISTTSVSGG PLSELTQRYV SGFDLAQSKH PWLILLLNQC NIPVCDTAYI DCAERCKCLP SPSVSLGQAI 3701: ASKLAEGKRA GYIADIASFP TFGRDELFTL LANDFSSSGS SYQAYELEVL SSLPIFKTVT GSYTHLQRHG LCIISGDSFL KPYDECCFCY LPDSVECHFL 3801: QALGVTVLHN HQTLVRFGLA EFESRSQSER EDILIYVYGN WLDLEVDSDV IEALREAKFV RNSDEFSSEL SKSKDLFDPS DTLLVSVFFG ERKRFPGERF 3901: SSEGWLRILR KAGLRTAAEA DVILECAKRV EFLGNERNRS SEEDDFETDL VHSEKDISVE LSTLAGSVIE AILLNFAGFY STAFCNTLGQ IACVPAESGF 4001: PSLGGRKGGK RVLTRYSEAV LLRDWPLAWS SVPILSTQRF IPPGFSWTAL RLKSPPIFST VLKHLQVIGR NGGEDTLAHW PNDPNVMTID VTSCEVLKYL 4101: EIVWDSLTTS DILELQKVAF LPAANGTRLV GASSLFVRLP INLSPFAFEL PSLYLPFLNI LKDLGLNDVL SVAAAKDILS KLQKLCGYRR LNPNELRAVM 4201: EILHFLCDEI NTTKPPEINT IKSDVIVPDD GCRLVHALSC VYVDSFGSRY VRYIDTARLR LVHPLLPERI CLDLGVRKLS DVVIEELENA EHIETLDNIG 4301: SISLKAVRRK LQSETFQAAL WTVSRQATTV DDLSFEVMQH SLQSAAEKIG FVRNIYTRFL LLPNSVDVTF VAKESMIPEW ENESHHRTMY FINRHRTSIL 4401: VSEPPGYISF LDVMATVVSE VLGFPTSLPI GSLFSCPEGS ETEITAYLRL CSYSLTNTGT ADSSVGQEIM PQDAVQVQLH PLRPFYKGEI VAWKIKQGDK 4501: LRYGRVPEDV RPSAGQALYR LKVEMTPGET GLLLSSQVFS FRGTSIENEG PSTLPEVLPA VSDKKSQEIS ESSRTNKTSS SQPVNEMQLG RVTAKELVEA 4601: VHEMLSAAGI NMELENQSLL QRTLTLQEEL KDSKVAFLLE QERAEASMKE AETAKSQWLC QICQTKEVEV TIVPCGHVLC RHCSTSVSRC PFCRLQVNRT 4701: IRIFRP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)