AT5G23030.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.952 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : tetraspanin12 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Member of TETRASPANIN family | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
tetraspanin12 (TET12); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: tetraspanin11 (TAIR:AT1G18520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:7726819..7727709 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 29500.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.06 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.49 | ||||||||||||||||||||||||||||||||||||
| Length | 264 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLRLSNAAVI TTNAILALIG LAALSFSVYV YVQGPSQCQR FVQNPLIVTA ALLFFISSLG LIAALYGSHI IITLYLFFLF LSILLLLVLS VFIFLVTNPT 101: AGKALSGRGI GNVKTGDYQN WIGNHFLRGK NWEGITKCLS DSRVCKRFGP RDIDFDSKHL SNVQFGCCRP PVECGFESKN ATWWTVPATA TTAIIGDCKA 201: WSNTQRQLCY ACESCKIGVL KGIRKRWRIL IVVNLLLILL VVFLYSCGCC VRKNNRVPWK RRFF |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)