AT5G22720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.841 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : F-box/RNI-like superfamily protein | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), FBD-like (InterPro:IPR006566), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G22730.1); Has 2105 Blast hits to 2068 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 2094; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:7547797..7551174 | ||||||||||||
| Molecular Weight (calculated) | 74047.30 Da | ||||||||||||
| IEP (calculated) | 8.06 | ||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||
| Length | 642 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEETKVKRTC LERTVCSSKA KEDLISQLPD SLITQILFYL QTKKAVTTSV LSKRWRSLWL STPGLVLISN DFTDYNAFVS FVDKFLGFSR EQKLCLHKLK 101: LSIRKGENDQ DCVTRWIDFV ATPKLKHLDV EIGPTRCECF EVIPLSLYSC ESLLYLRLNH VCLGKFESVS LPCLKTMSLE QNIYANEADL ESLISTCPVL 201: EDLSFVSGAY DKVNVLRVQS QTLTSLNIEG CVEYLDLDKS EVLIDATRLK YLNLEADQYE SKTIRNSGSL TKVNLLGYFH MKNNDDDDEV DLQKRDMVHN 301: FFTSISGVSD MKISSQAFAG LRYWTPKKEL RLSFVPRCLL SSLEFVEIKG CSRSNMERQA MSDRGGVVVR GRSRTGEDRI NFRRYHKFVS FMTSFLDYSK 401: DLCIHILKLS FEINHHGPKR LHTCETLVSL KLRNVSLPDF EYVDIDVDFD IFDNHSAGNV SSKKIAVRKL LTGLSSVRDM TISGKNLKVI CLYLNLELLP 501: QFPHMTRLCV NSYEYYLKML PMLLKSCPNL KSLFLIYMQE PMEYKNEQTM LSLPVPECLR PSLEYIKMKR PINRAGAEMI LANYFLENEA VLKKFTLRLY 601: CGKVEEESVI FMELLKFRKC SASCEVVVQR IETYPTMIHR FL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)