AT5G22670.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 0.375 cytosol 0.360 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : F-box/RNI-like/FBD-like domains-containing protein | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (TAIR:AT5G22660.2); Has 2175 Blast hits to 2122 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 2174; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:7538192..7539685 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 50904.90 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.26 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||||||
Length | 443 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSTKRGVTSQ DSISLLPDDL LCRILSNLPT KVAVRTSVLS KRWKRFSLSV PLLEFNVSEF HGYYEFARVV HGFLDTSRET CIHKLKLAFE KKQHDRSYLT 101: QWIHNAVKRK VQHLDIGRWS YLGQELIPHS LYTCETLVSL RLHNVSLPDF DHVSLPRLKT MHLIDNIYPN DALLENLISS CPVLEDLNVS RDVENIVKVL 201: RVRSLSLKSL ILALDGDRYG DIEDDSWEVV IDAPRLSYLS LRDDQSKSFV LSSVTSPAKV DIDVTFDVVR SVLKNFLLTR SVVRNFFTRL SSVRDMTMSG 301: TTLKVLSRYM RHEPLPQFPN MIQFYAVFCN SDLEKLPNFL ESCPNLKSLV LELEVFKKND LLILSSSIPK CLRSSLEHVE IHTPISGAEA EMKLVKYFLE 401: NSAVLKKFTL QLGCKRMDEE SIIFKELLRF RRCSASCEVV VEV |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)