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AT5G22660.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.498
cytosol 0.485
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G22700.1); Has 2205 Blast hits to 2174 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2205; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT5G22660EnsemblPlants:AT5G22660.1entrez:832329hmmpanther:PTHR32212
hmmpanther:PTHR32212:SF126Pfam:PF00646Pfam:PF07723Pfscan:PS50181
SUPFAM:SSF52047
Coordinates (TAIR10) chr5:-:7536906..7537853
Molecular Weight (calculated) 35939.00 Da
IEP (calculated) 4.64
GRAVY (calculated) -0.01
Length 315 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNQGAIRRS GEDRISSLPD HLLSQILSNL PTENAVTTSI LSTRWKDLWL STPVLDIDID AFDDATTFIS FATRFLDSFK DSCLHKLQIS FQMEAVDMWT
101: IIPWIEDAVK RRIQHLEVDS RIDHMIDTLP LTVYLSESLV SLRLHLVMLH RFVFVSLPNL KVMHLEENIY SYAETMEKFI SSCPVLEDLT VVRNVDEATE
201: KVLRVSSQSL NSLKLVIDSS KCWYNDDSDD WKVVIDAPQL VYLSLKDDQS VSFVINNLCS SAKADIKVSF NVSDIWDLEE SFERSNVGKF LTGLSSLRDM
301: TISGTTLKVY MHTNI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)