AT5G22660.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 0.498 cytosol 0.485 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein | ||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G22700.1); Has 2205 Blast hits to 2174 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2205; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:7536906..7537853 | ||||||||||||
Molecular Weight (calculated) | 35939.00 Da | ||||||||||||
IEP (calculated) | 4.64 | ||||||||||||
GRAVY (calculated) | -0.01 | ||||||||||||
Length | 315 amino acids | ||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSNQGAIRRS GEDRISSLPD HLLSQILSNL PTENAVTTSI LSTRWKDLWL STPVLDIDID AFDDATTFIS FATRFLDSFK DSCLHKLQIS FQMEAVDMWT 101: IIPWIEDAVK RRIQHLEVDS RIDHMIDTLP LTVYLSESLV SLRLHLVMLH RFVFVSLPNL KVMHLEENIY SYAETMEKFI SSCPVLEDLT VVRNVDEATE 201: KVLRVSSQSL NSLKLVIDSS KCWYNDDSDD WKVVIDAPQL VYLSLKDDQS VSFVINNLCS SAKADIKVSF NVSDIWDLEE SFERSNVGKF LTGLSSLRDM 301: TISGTTLKVY MHTNI |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)