AT5G22480.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.897 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ZPR1 zinc-finger domain protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ZPR1 zinc-finger domain protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, ZPR1-type (InterPro:IPR004457); BEST Arabidopsis thaliana protein match is: ZPR1 zinc-finger domain protein (TAIR:AT5G37340.3); Has 1143 Blast hits to 605 proteins in 280 species: Archae - 310; Bacteria - 0; Metazoa - 225; Fungi - 282; Plants - 53; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:7451643..7456168 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54079.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.34 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||
| Length | 493 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDNKNDQDID VRSVVEAVSA DLSFGAPLYV VESMCMRCQE NGTTRFLLTL IPHFRKVLIS AFECPHCGER NNEVQFAGEI QPRGCCYNLE VLAGDVKIFD 101: RQVVKSESAT IKIPELDFEI PPEAQRGSLS TVEGILARAA DELSALQEER KKVDPKTAEA IDQFLSKLRA CAKAETSFTF ILDDPAGNSF IENPHAPSPD 201: PSLTIKFYER TPEQQATLGY VANPSQAGQS EGSLGAPSTK TAYVPNGTIG ATAGHRAIAQ SNSTDISDNL FRYSAPEEVM TFPSTCGACT EPCETRMFVT 301: KIPYFQEVIV MASTCDSCGY RNSELKPGGA IPEKGKKITL SVRNITDLSR DVIKSDTAGV IIPELDLELA GGTLGGMVTT VEGLVTQIRE SLARVHGFTF 401: GDSMEESKLN KWREFGARLT KLLSFEQPWT LILDDELANS FIAPVTDDIK DDHQLTFEEY ERSWDQNEEL GLNDIDTSSA DAAYESTETT KLP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)