AT5G22420.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.655 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : fatty acid reductase 7 | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
fatty acid reductase 7 (FAR7); FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity; INVOLVED IN: microsporogenesis, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, embryo, sepal, flower, stamen; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Male sterility (InterPro:IPR004262), NAD(P)-binding domain (InterPro:IPR016040), Male sterility, NAD-binding (InterPro:IPR013120); BEST Arabidopsis thaliana protein match is: fatty acid reductase 1 (TAIR:AT5G22500.1); Has 1952 Blast hits to 1452 proteins in 164 species: Archae - 0; Bacteria - 126; Metazoa - 1242; Fungi - 14; Plants - 452; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:+:7429903..7432586 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 46820.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 10.01 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 409 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MEPNCVQFLE NRTILVTGAS GFLAKVLVER ILRLQPNVKR LYLLVRASDK KSAEQRYDVA LGINTFGAIN VLNFAKKCVK PKLLLHVSTV YVCGERPGHI 101: VEKHFAMGES LNGKNKVDIN TERRLADQKS KQFKEQGCSE EETEQAMKDF GLKRARLYGW PNTYVFTKAM GEMLLGHYRE TMPIVIIRPT IITSTFSDPF 201: PGWIEGLKTV DSVIIFYGKG ILKCFLVDQK TVCDIIPVDM VVNAMIAIAA DHCHDSGSHT VYHVGSSNQN PVIYKQIYEM MSRYFMKSPL VGRNGMLIVP 301: KVTRISTLAR FRVYTNLRYK LPIQILGLLS VISLSQRDKF ALHNRKFKMA MRLVKLYKPY VLFKGIFDDK NMETLRIKNE AKDMEKLFGT NPKCIDWEDY 401: FMIRISLAS |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)