AT5G22260.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING/FYVE/PHD zinc finger superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Sporophytic factor controlling anther and pollen development. Mutants fail to make functional pollen;pollen degeneration occurs after microspore release and the tapetum also appears abnormally vacuolated. Similar to PHD-finger motif transcription factors. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
male sterility 1 (MS1); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G66170.1); Has 884 Blast hits to 874 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 282; Fungi - 312; Plants - 261; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:7367707..7370192 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 77008.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.81 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 672 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MANLIRTDHQ QHIPKKRKRG ESRVFRLKTF GESGHPAEMN ELSFRDNLAK LLEFGHFESS GLMGSWSFQL EIQRNPNPLY VLLFVVEEPI EASLNLRCNH 101: CQYVGWGNQM ICNKKYHFVI PSKETMAAFL KLEGGGYAFP EKESFSHLVE LQGHVLHGFF HSNGFGHLLS LNGIETGSDL TGHQVMDLWD RLCTGLKARK 201: IGLNDASHKK GMELRLLHGV AKGEPWFGRW GYRFGSGTYG VTQKIYEKAL ESVRNIPLCL LNHHLTSLNR ETPILLSKYQ SLSTEPLITL SDLFRFMLHL 301: HSRLPRDNYM SNSRNQIISI DSTNCRWSQK RIQMAIKVVI ESLKRVEYRW ISRQEVRDAA RNYIGDTGLL DFVLKSLGNQ VVGNYLVRRS LNPVKKVLEY 401: SLEDISNLLP SSNNELITLQ NQNSMGKMAT NGHNKITRGQ VMKDMFYFYK HILMDYKGVL GPIGGILNQI GMASRAILDA KYFIKEYHYI RDTSAKTLHL 501: DRGEELGIFC TIAWKCHHHN NEIKVPPQEC IVVKKDATLS EVYGEAERVF RDIYWELRDV VVESVVGGQI EITRVDEMAL NGNKGLVLEG NVGMMMNIEV 601: TKCYEDDDKK KDKRIECECG ATEEDGERMV CCDICEVWQH TRCVGVQHNE EVPRIFLCQS CDQHLIPLSF LP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)