AT5G20940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Glycosyl hydrolase family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Glycosyl hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein (TAIR:AT5G20950.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:7104076..7106653 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67654.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.53 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.04 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 626 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSSSYLLQT LGLLLLCCTV AANKVPLANA KYKDPKEPLG VRIKNLMSHM TLEEKIGQMV QVERVNATTE VMQKYFVGSV FSGGGSVPKP YIGPEAWVNM 101: VNEVQKKALS TRLGIPIIYG IDAVHGHNTV YNATIFPHNV GLGVTRDPGL VKRIGEATAL EVRATGIQYV FAPCIAVCRD PRWGRCYESY SEDHKIVQQM 201: TEIIPGLQGD LPTGQKGVPF VAGKTKVAAC AKHFVGDGGT LRGMNANNTV INSNGLLGIH MPAYHDAVNK GVATVMVSYS SINGLKMHAN KKLITGFLKN 301: KLKFRGIVIS DYLGVDQINT PLGANYSHSV YAATTAGLDM FMGSSNLTKL IDELTSQVKR KFIPMSRIDD AVKRILRVKF TMGLFENPIA DHSLAKKLGS 401: KEHRELAREA VRKSLVLLKN GENADKPLLP LPKKANKILV AGTHADNLGY QCGGWTITWQ GLNGNNLTIG TTILAAVKKT VDPKTQVIYN QNPDTNFVKA 501: GDFDYAIVAV GEKPYAEGFG DSTNLTISEP GPSTIGNVCA SVKCVVVVVS GRPVVMQISN IDALVAAWLP GTEGQGVADV LFGDYGFTGK LARTWFKTVD 601: QLPMNVGDPH YDPLYPFGFG LITKPN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)