suba logo
AT5G20640.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 0.747
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF567)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF567); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: leaf whorl, hypocotyl, root, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF567) (TAIR:AT2G05910.1); Has 293 Blast hits to 292 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 293; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JT9AeggNOG:ENOG410YHS0EMBL:AF296832EMBL:CP002688
EMBL:DQ446973EMBL:DQ653300EnsemblPlants:AT5G20640EnsemblPlants:AT5G20640.1
entrez:832187GeneID:832187Genevisible:A0MFH4Gramene:AT5G20640.1
hmmpanther:PTHR31087hmmpanther:PTHR31087:SF3HOGENOM:HOG000239786InParanoid:A0MFH4
InterPro:IPR007612InterPro:IPR025659iPTMnet:A0MFH4KEGG:ath:AT5G20640
OMA:HGESTICPaxDb:A0MFH4Pfam:A0MFH4Pfam:PF04525
PhylomeDB:A0MFH4PRIDE:A0MFH4PRO:PR:A0MFH4ProteinModelPortal:A0MFH4
Proteomes:UP000006548RefSeq:NP_197564.1SMR:A0MFH4SUPFAM:SSF54518
TAIR:AT5G20640UniGene:At.24711UniGene:At.72357UniProt:A0MFH4
Coordinates (TAIR10) chr5:+:6984379..6985205
Molecular Weight (calculated) 23710.90 Da
IEP (calculated) 9.42
GRAVY (calculated) -0.19
Length 215 amino acids
Sequence (TAIR10)
(BLAST)
001: MGARSSQTVD PVLSRRYSSE SETVLVVRRR PPMVNGGGFV VSNSKQVVVF RVDGCGVLGT KGKLLLRNGD GNDLLLIRKM GGIVQALNMV HNKWEGFGYD
101: NEGTERLVFT LKDPKDSCLV QNSSIKILVH GKPPKISSTR NNYVEIKGSF AERACNIMDS DGKAIAKVRI EKEMEEMVGN KKDLYHVIVK PNVDQSFIVG
201: LIAILDYIHG ESTIC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)