suba logo
AT5G20510.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alfin-like 5
Curator
Summary (TAIR10)
AL5 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
Computational
Description (TAIR10)
alfin-like 5 (AL5); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Protein of unknown function DUF3594 (InterPro:IPR021998), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: alfin-like 3 (TAIR:AT3G42790.1); Has 1720 Blast hits to 1673 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 749; Fungi - 331; Plants - 537; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).
Protein Annotations
BioGrid:17449eggNOG:ENOG410YG6PeggNOG:KOG1632EMBL:AF296833
EMBL:BT015937EMBL:BT020505EMBL:CP002688EnsemblPlants:AT5G20510
EnsemblPlants:AT5G20510.1entrez:832173Gene3D:3.30.40.10GeneID:832173
Genevisible:Q5XEM9GO:GO:0003677GO:GO:0003714GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0008270GO:GO:0009414
GO:GO:0009651GO:GO:0016568GO:GO:1903507Gramene:AT5G20510.1
hmmpanther:PTHR12321hmmpanther:PTHR12321:SF61HOGENOM:HOG000238550InParanoid:Q5XEM9
InterPro:IPR001965InterPro:IPR011011InterPro:IPR013083InterPro:IPR019786
InterPro:IPR019787InterPro:IPR021998KEGG:ath:AT5G20510OMA:EMPSSAN
PaxDb:Q5XEM9Pfam:PF00628Pfam:PF12165Pfam:Q5XEM9
Pfscan:PS50016PhylomeDB:Q5XEM9PRIDE:Q5XEM9PRO:PR:Q5XEM9
PROSITE:PS01359PROSITE:PS50016ProteinModelPortal:Q5XEM9Proteomes:UP000006548
RefSeq:NP_197551.2scanprosite:PS01359SMART:SM00249SMR:Q5XEM9
STRING:3702.AT5G20510.1SUPFAM:SSF57903TAIR:AT5G20510tair10-symbols:AL5
UniGene:At.68535UniGene:At.837UniProt:Q5XEM9
Coordinates (TAIR10) chr5:-:6939991..6942846
Molecular Weight (calculated) 29593.30 Da
IEP (calculated) 4.50
GRAVY (calculated) -0.77
Length 260 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGGTAHYSP RTVEEVFRDF KGRRAGIIQA LTTDVEDFFQ QCDPEKQNLC LYGFPNEVWE VNLPAEEVPP ELPEPALGIN FARDGMQERN WLSLVAVHSD
101: AWLLSVSFYF GSRFGFDRAD RKRLFSMINE VPTVYEVVTG NAEKQTKEMP SSANQNGNRS KSNSKMRGLE SKSSKTIHAK DEEEGLELEE GEEEEDEDED
201: EHGETLCGAC GDNYASDEFW ICCDMCEKWF HGECVKITPA RAEHIKHYKC PTCSNKRARP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)