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AT5G20490.2
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.986
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Myosin family protein with Dil domain
Curator
Summary (TAIR10)
Encodes a member of the type XI myosin protein family involved in root hair growth, trichome development, and organelle trafficking. This gene appears to be expressed at low levels throughout the plant.
Computational
Description (TAIR10)
XIK; FUNCTIONS IN: motor activity; INVOLVED IN: in 11 processes; LOCATED IN: myosin complex; EXPRESSED IN: stem, fruit, flower, root, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT1G54560.1); Has 39115 Blast hits to 25959 proteins in 2421 species: Archae - 443; Bacteria - 5231; Metazoa - 20936; Fungi - 2937; Plants - 2132; Viruses - 125; Other Eukaryotes - 7311 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT5G20490EnsemblPlants:AT5G20490.2entrez:832171hmmpanther:PTHR13140
hmmpanther:PTHR13140:SF390ncoils:CoilPfam:PF00063Pfam:PF00612
Pfam:PF01843Pfscan:PS50096Pfscan:PS51126Pfscan:PS51456
SMART:SM00242tair10-symbols:ATXIKtair10-symbols:XI-17tair10-symbols:XIK
UniProt:F4K5J2
Coordinates (TAIR10) chr5:-:6927064..6936079
Molecular Weight (calculated) 166519.00 Da
IEP (calculated) 8.78
GRAVY (calculated) -0.41
Length 1465 amino acids
Sequence (TAIR10)
(BLAST)
0001: MTKLSYLHEP GVLNNLAMRY ELNEIYTYTG NILIAVNPFQ RLPHLYDTHM MEQYKGAGFG ELSPHVFAIA EVAYRAMINE GKSNSILVSG ESGAGKTETT
0101: KMLMRYLAYL GGRSGVEGRT VEQQVLESNP VLEAFGNAKT LRNNNSSRFG KFVELQFDNC GRISGAAVRT YLLERSRVCQ ISDPERNYHC FYLLCAAPPE
0201: EREKFKLGDP KLFHYLNQSK CYKLDGVDDT EEYLATRRAM DIVGISEEEQ DAIFRVVAAI LHLGNVNFAK GKEIDSSVLK DEKSRYHLDV CAELLRCDAK
0301: KMEDALIKRV MVTPEEVITR TLDPDSATGS RDALAKTIYS RLFDWLVDKI NNSIGQDPNS KTIIGVLDIY GFESFKINSF EQFCINFTNE KLQQHFNQHV
0401: FKMEQEDYTK EEINWSYIEF VDNKDVLELI EKKPGGVIAL LDEACMFPKS THETFAQKLY QTFKNYKRFT KPKLSRTSFA ISHYAGEVTY QADLFLDKNK
0501: DYVVAEHQDL LIASSDTFVA GLFPRLPEET SSKTKFSSIG SRFKLQLQSL METLSSTEPH YIRCVKPNNV LKPAIFENVN VIQQLRCGGV LEAIRISCAG
0601: YPTKRTFYEF LNRFGVLAPE VLEGNYDDKV ACKMLLDKIG LKGYELGKTK VFLRAGQMAE LDARRAEVLG NAARRIQRQS RTFIACKEFR ALRGAAIVLQ
0701: SNCRGKLACN LYEEMRRQAA AVKIQKIFRR HIARESYLRI RHSTITVQTA LRGMVARNEF RFRKQMKAAT IIQARLRSHL THSYYKQLQK AALSTQCGWR
0801: SRVARKELRT LKMAARDTGA LREAKDKLEK RVEELTWRLQ LEKRQRTELE EAKTQEYAKQ QEALETMRLQ VEEANAAVIR EREAARKAIE EAPPVIKETP
0901: VLVEDTEKIN SLTSEVEALK ASLQAERQAA ENLRKAFSEA EARNSELATE LENATRKADQ LHESVQRLEE KLSNSESEIQ VLRQQALAIS PTSRTMATRS
1001: KTMLLPRTPE NGNYLNGGTK TTPDMTLAVR EPESEEKPQK HLNEKQQENQ DLLVKCISQN LGYNGDKPVA ACVIYKCLLH WRSFEVERTS VFDRIIQTIA
1101: TAIEVPDNNE VLAYWLSNSA TLLLLLQRTL KATGAASLTP QRRRTTSASL FGRMSQGLRG SPQSAGLSFL NRQGLTKLDD LRQVEAKYPA LLFKQQLTAF
1201: LEKIYGMIRD NLKKEISPLL GLCIQAPRTS RASLVKGRAQ ANAVAQQALI AHWQSIRKSL NSYLNLMKAN NAPPFLVRKV FTQIFSFINV QLFNSLLLRR
1301: ECCSFSNGEY VKAGLAELEQ WCIEATDEYA GSAWDELRHI RQAVGFLVIH QKPKKTLDEI TRELCPVLSI QQLYRISTMY WDDKYGTHSV SSDVIANMRV
1401: MMTEDSNNAV SSSFLLDDDS SIPFTVEDIS KSMQQVDVND IEPPQLIREN SGFGFLLTRK EGSTS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)