AT5G20490.2
Subcellular Consensus
(Prediction and Experimental) min: ![]() .
SUBAcon:cytosol 0.986 What is SUBAcon? |
|||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||
Description (TAIR10) | protein_coding : Myosin family protein with Dil domain | ||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a member of the type XI myosin protein family involved in root hair growth, trichome development, and organelle trafficking. This gene appears to be expressed at low levels throughout the plant. | ||||||||||||||||||||
Computational Description (TAIR10) |
XIK; FUNCTIONS IN: motor activity; INVOLVED IN: in 11 processes; LOCATED IN: myosin complex; EXPRESSED IN: stem, fruit, flower, root, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT1G54560.1); Has 39115 Blast hits to 25959 proteins in 2421 species: Archae - 443; Bacteria - 5231; Metazoa - 20936; Fungi - 2937; Plants - 2132; Viruses - 125; Other Eukaryotes - 7311 (source: NCBI BLink). | ||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||
Coordinates (TAIR10) | chr5:-:6927064..6936079 | ||||||||||||||||||||
Molecular Weight (calculated) | 166519.00 Da | ||||||||||||||||||||
IEP (calculated) | 8.78 | ||||||||||||||||||||
GRAVY (calculated) | -0.41 | ||||||||||||||||||||
Length | 1465 amino acids | ||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
0001: MTKLSYLHEP GVLNNLAMRY ELNEIYTYTG NILIAVNPFQ RLPHLYDTHM MEQYKGAGFG ELSPHVFAIA EVAYRAMINE GKSNSILVSG ESGAGKTETT 0101: KMLMRYLAYL GGRSGVEGRT VEQQVLESNP VLEAFGNAKT LRNNNSSRFG KFVELQFDNC GRISGAAVRT YLLERSRVCQ ISDPERNYHC FYLLCAAPPE 0201: EREKFKLGDP KLFHYLNQSK CYKLDGVDDT EEYLATRRAM DIVGISEEEQ DAIFRVVAAI LHLGNVNFAK GKEIDSSVLK DEKSRYHLDV CAELLRCDAK 0301: KMEDALIKRV MVTPEEVITR TLDPDSATGS RDALAKTIYS RLFDWLVDKI NNSIGQDPNS KTIIGVLDIY GFESFKINSF EQFCINFTNE KLQQHFNQHV 0401: FKMEQEDYTK EEINWSYIEF VDNKDVLELI EKKPGGVIAL LDEACMFPKS THETFAQKLY QTFKNYKRFT KPKLSRTSFA ISHYAGEVTY QADLFLDKNK 0501: DYVVAEHQDL LIASSDTFVA GLFPRLPEET SSKTKFSSIG SRFKLQLQSL METLSSTEPH YIRCVKPNNV LKPAIFENVN VIQQLRCGGV LEAIRISCAG 0601: YPTKRTFYEF LNRFGVLAPE VLEGNYDDKV ACKMLLDKIG LKGYELGKTK VFLRAGQMAE LDARRAEVLG NAARRIQRQS RTFIACKEFR ALRGAAIVLQ 0701: SNCRGKLACN LYEEMRRQAA AVKIQKIFRR HIARESYLRI RHSTITVQTA LRGMVARNEF RFRKQMKAAT IIQARLRSHL THSYYKQLQK AALSTQCGWR 0801: SRVARKELRT LKMAARDTGA LREAKDKLEK RVEELTWRLQ LEKRQRTELE EAKTQEYAKQ QEALETMRLQ VEEANAAVIR EREAARKAIE EAPPVIKETP 0901: VLVEDTEKIN SLTSEVEALK ASLQAERQAA ENLRKAFSEA EARNSELATE LENATRKADQ LHESVQRLEE KLSNSESEIQ VLRQQALAIS PTSRTMATRS 1001: KTMLLPRTPE NGNYLNGGTK TTPDMTLAVR EPESEEKPQK HLNEKQQENQ DLLVKCISQN LGYNGDKPVA ACVIYKCLLH WRSFEVERTS VFDRIIQTIA 1101: TAIEVPDNNE VLAYWLSNSA TLLLLLQRTL KATGAASLTP QRRRTTSASL FGRMSQGLRG SPQSAGLSFL NRQGLTKLDD LRQVEAKYPA LLFKQQLTAF 1201: LEKIYGMIRD NLKKEISPLL GLCIQAPRTS RASLVKGRAQ ANAVAQQALI AHWQSIRKSL NSYLNLMKAN NAPPFLVRKV FTQIFSFINV QLFNSLLLRR 1301: ECCSFSNGEY VKAGLAELEQ WCIEATDEYA GSAWDELRHI RQAVGFLVIH QKPKKTLDEI TRELCPVLSI QQLYRISTMY WDDKYGTHSV SSDVIANMRV 1401: MMTEDSNNAV SSSFLLDDDS SIPFTVEDIS KSMQQVDVND IEPPQLIREN SGFGFLLTRK EGSTS |
||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)