AT5G20490.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Myosin family protein with Dil domain | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the type XI myosin protein family involved in root hair growth, trichome development, and organelle trafficking. This gene appears to be expressed at low levels throughout the plant. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
XIK; FUNCTIONS IN: motor activity; INVOLVED IN: in 11 processes; LOCATED IN: endomembrane system, myosin complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT1G54560.1); Has 40570 Blast hits to 26875 proteins in 2480 species: Archae - 466; Bacteria - 5527; Metazoa - 21427; Fungi - 3168; Plants - 2202; Viruses - 135; Other Eukaryotes - 7645 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:6927064..6936825 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 175062.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.35 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.38 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1545 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKETEGNAQC YAIFVVFLIN IIVGSHVWIE DPGAAWIDGE VVKINGEEVH AHTTNGKTVV ANIANVFPKD TEAPPGGVDD MTKLSYLHEP GVLNNLAMRY 0101: ELNEIYTYTG NILIAVNPFQ RLPHLYDTHM MEQYKGAGFG ELSPHVFAIA EVAYRAMINE GKSNSILVSG ESGAGKTETT KMLMRYLAYL GGRSGVEGRT 0201: VEQQVLESNP VLEAFGNAKT LRNNNSSRFG KFVELQFDNC GRISGAAVRT YLLERSRVCQ ISDPERNYHC FYLLCAAPPE EREKFKLGDP KLFHYLNQSK 0301: CYKLDGVDDT EEYLATRRAM DIVGISEEEQ DAIFRVVAAI LHLGNVNFAK GKEIDSSVLK DEKSRYHLDV CAELLRCDAK KMEDALIKRV MVTPEEVITR 0401: TLDPDSATGS RDALAKTIYS RLFDWLVDKI NNSIGQDPNS KTIIGVLDIY GFESFKINSF EQFCINFTNE KLQQHFNQHV FKMEQEDYTK EEINWSYIEF 0501: VDNKDVLELI EKKPGGVIAL LDEACMFPKS THETFAQKLY QTFKNYKRFT KPKLSRTSFA ISHYAGEVTY QADLFLDKNK DYVVAEHQDL LIASSDTFVA 0601: GLFPRLPEET SSKTKFSSIG SRFKLQLQSL METLSSTEPH YIRCVKPNNV LKPAIFENVN VIQQLRCGGV LEAIRISCAG YPTKRTFYEF LNRFGVLAPE 0701: VLEGNYDDKV ACKMLLDKIG LKGYELGKTK VFLRAGQMAE LDARRAEVLG NAARRIQRQS RTFIACKEFR ALRGAAIVLQ SNCRGKLACN LYEEMRRQAA 0801: AVKIQKIFRR HIARESYLRI RHSTITVQTA LRGMVARNEF RFRKQMKAAT IIQARLRSHL THSYYKQLQK AALSTQCGWR SRVARKELRT LKMAARDTGA 0901: LREAKDKLEK RVEELTWRLQ LEKRQRTELE EAKTQEYAKQ QEALETMRLQ VEEANAAVIR EREAARKAIE EAPPVIKETP VLVEDTEKIN SLTSEVEALK 1001: ASLQAERQAA ENLRKAFSEA EARNSELATE LENATRKADQ LHESVQRLEE KLSNSESEIQ VLRQQALAIS PTSRTMATRS KTMLLPRTPE NGNYLNGGTK 1101: TTPDMTLAVR EPESEEKPQK HLNEKQQENQ DLLVKCISQN LGYNGDKPVA ACVIYKCLLH WRSFEVERTS VFDRIIQTIA TAIEVPDNNE VLAYWLSNSA 1201: TLLLLLQRTL KATGAASLTP QRRRTTSASL FGRMSQGLRG SPQSAGLSFL NRQGLTKLDD LRQVEAKYPA LLFKQQLTAF LEKIYGMIRD NLKKEISPLL 1301: GLCIQAPRTS RASLVKGRAQ ANAVAQQALI AHWQSIRKSL NSYLNLMKAN NAPPFLVRKV FTQIFSFINV QLFNSLLLRR ECCSFSNGEY VKAGLAELEQ 1401: WCIEATDEYA GSAWDELRHI RQAVGFLVIH QKPKKTLDEI TRELCPVLSI QQLYRISTMY WDDKYGTHSV SSDVIANMRV MMTEDSNNAV SSSFLLDDDS 1501: SIPFTVEDIS KSMQQVDVND IEPPQLIREN SGFGFLLTRK EGSTS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)