AT5G20390.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Glycosyl hydrolase superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-1,3-glucanase 5 (TAIR:AT5G20340.1); Has 2108 Blast hits to 2093 proteins in 124 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 2096; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:6892982..6894016 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37966.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.72 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.04 | ||||||||||||||||||||||||||||||||||||
| Length | 344 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDCHRKTFLL KFLCVAFLLN YSNVGFVDAA TNIGLNYGLL GDNLPPPSEV INLYKSLSVT NIRIFDTTTD VLNAFRGNRN IGVMVDVKNQ DLEALSVSEE 101: AVNTWFVTNI EPYLADVNIT FIAVGNEVIP GEIGSYVLPV MKSLTNIVKS RSLPILISTT VAMTNLGQSY PPSAGDFMPQ AREQLTPVLK FLSQTNTPIL 201: VNIYPYFAYA ADPINIQLDY AIFNTNKVVV QDGPLGYTNM FDVIFDAFVW AMEKEGVKDL PMVVTETGWP SAGNGNLTTP DIASIYNTNF VKHVESGKGT 301: PKRPKSGISG FLFATFNENQ KPAGTEQNFG LYNPTDMKPI YKMF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)