AT5G20320.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.994 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : dicer-like 4 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes an RNase III-like enzyme that catalyzes processing of trans-acting small interfering RNA precursors in a distinct small RNA biogenesis pathway. The protein is also involved in the production of 21-nt primary siRNAs from both inverted-repeat constructs and endogenous sequences, as well as the RDR6-dependent 21-nt secondary siRNAs involved in long-range cell-to-cell signaling. It binds DRB4, a ds-RNA binding protein. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
dicer-like 4 (DCL4); CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Double-stranded RNA-binding (InterPro:IPR001159), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Dicer double-stranded RNA-binding fold (InterPro:IPR005034), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: dicer-like 2 (TAIR:AT3G03300.3). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:6859571..6869068 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 189688.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.73 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1688 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MRDEVDLSLT IPSKLLGKRD REQKNCEEEK NKNKKAKKQQ KDPILLHTSA ATHKFLPPPL TMPYSEIGDD LRSLDFDHAD VSSDLHLTSS SSVSSFSSSS 0101: SSLFSAAGTD DPSPKMEKDP RKIARRYQVE LCKKATEENV IVYLGTGCGK THIAVMLIYE LGHLVLSPKK SVCIFLAPTV ALVEQQAKVI ADSVNFKVAI 0201: HCGGKRIVKS HSEWEREIAA NEHCFIKMEC ISLLIFDECH HAQQQSNHPY AEIMKVFYKS ESLQRPRIFG MTASPVVGKG SFQSENLSKS INSLENLLNA 0301: KVYSVESNVQ LDGFVSSPLV KVYYYRSALS DASQSTIRYE NMLEDIKQRC LASLKLLIDT HQTQTLLSMK RLLKRSHDNL IYTLLNLGLW GAIQAAKIQL 0401: NSDHNVQDEP VGKNPKSKIC DTYLSMAAEA LSSGVAKDEN ASDLLSLAAL KEPLFSRKLV QLIKILSVFR LEPHMKCIIF VNRIVTARTL SCILNNLELL 0501: RSWKSDFLVG LSSGLKSMSR RSMETILKRF QSKELNLLVA TKVGEEGLDI QTCCLVIRYD LPETVTSFIQ SRGRARMPQS EYAFLVDSGN EKEMDLIENF 0601: KVNEDRMNLE ITYRSSEETC PRLDEELYKV HETGACISGG SSISLLYKYC SRLPHDEFFQ PKPEFQFKPV DEFGGTICRI TLPANAPISE IESSLLPSTE 0701: AAKKDACLKA VHELHNLGVL NDFLLPDSKD EIEDELSDDE FDFDNIKGEG CSRGDLYEMR VPVLFKQKWD PSTSCVNLHS YYIMFVPHPA DRIYKKFGFF 0801: MKSPLPVEAE TMDIDLHLAH QRSVSVKIFP SGVTEFDNDE IRLAELFQEI ALKVLFERGE LIPDFVPLEL QDSSRTSKST FYLLLPLCLH DGESVISVDW 0901: VTIRNCLSSP IFKTPSVLVE DIFPPSGSHL KLANGCWNID DVKNSLVFTT YSKQFYFVAD ICHGRNGFSP VKESSTKSHV ESIYKLYGVE LKHPAQPLLR 1001: VKPLCHVRNL LHNRMQTNLE PQELDEYFIE IPPELSHLKI KGLSKDIGSS LSLLPSIMHR MENLLVAIEL KHVLSASIPE IAEVSGHRVL EALTTEKCHE 1101: RLSLERLEVL GDAFLKFAVS RHLFLHHDSL DEGELTRRRS NVVNNSNLCR LAIKKNLQVY IRDQALDPTQ FFAFGHPCRV TCDEVASKEV HSLNRDLGIL 1201: ESNTGEIRCS KGHHWLYKKT IADVVEALVG AFLVDSGFKG AVKFLKWIGV NVDFESLQVQ DACIASRRYL PLTTRNNLET LENQLDYKFL HKGLLVQAFI 1301: HPSYNRHGGG CYQRLEFLGD AVLDYLMTSY FFTVFPKLKP GQLTDLRSLS VNNEALANVA VSFSLKRFLF CESIYLHEVI EDYTNFLASS PLASGQSEGP 1401: RCPKVLGDLV ESCLGALFLD CGFNLNHVWT MMLSFLDPVK NLSNLQISPI KELIELCQSY KWDREISATK KDGAFTVELK VTKNGCCLTV SATGRNKREG 1501: TKKAAQLMIT NLKAHENITT SHPLEDVLKN GIRNEAKLIG YNEDPIDVVD LVGLDVENLN ILETFGGNSE RSSSYVIRRG LPQAPSKTED RLPQKAIIKA 1601: GGPSSKTAKS LLHETCVANC WKPPHFECCE EEGPGHLKSF VYKVILEVED APNMTLECYG EARATKKGAA EHAAQAAIWC LKHSGFLC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)