AT5G20310.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.712 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Adenine nucleotide alpha hydrolases-like superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Adenine nucleotide alpha hydrolases-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: sepal, flower, pollen tube; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016); BEST Arabidopsis thaliana protein match is: Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (TAIR:AT2G24370.1); Has 270 Blast hits to 269 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 268; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:6857553..6859001 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44464.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.87 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||
| Length | 394 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MERNEVREGP IAIAIDRDKT TSCQALKWAV DHYIPRGGTV KLVHVIQRSA LNISNGSHTD DESSERQSND KRTTAQFLPL RCLCMRRNIQ SEIVLLEDQD 101: VAKALIEYIS QNCISTFILG ASLKKSITRL FKADDIPSNV MRWAPDFCTV LVLSKGRLSS VRAATRPLPQ VLPSSSSGTA PLSPRSNGDE APSEMSLSRE 201: DDVFLEEFSS VDSDSSVNIS NRFSTDSSVL AFYEKLAAPP MLEIPRFSVL DDEKAKFSIY LNSLSDEKNC TLASPLSPVD DATAEMRRLK KELKETMNMY 301: HAACKEALME KERAVELVMW KKKAELRIQM AEETARMAIM EMKAVKGKGS DDRKMVWDTL GESHTVVKHE SLLHILVVLF LFYIYFTLRK LYFM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)