AT5G20300.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.979 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Avirulence induced gene (AIG1) family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Avirulence induced gene (AIG1) family protein; FUNCTIONS IN: GTP binding; LOCATED IN: chloroplast outer membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: multimeric translocon complex in the outer envelope membrane 132 (TAIR:AT2G16640.1); Has 979 Blast hits to 964 proteins in 184 species: Archae - 2; Bacteria - 204; Metazoa - 369; Fungi - 41; Plants - 292; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:6853544..6855541 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 75146.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.10 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||||||||||||||||||||||
| Length | 665 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLIRAEESEL KNVKLRQDRA KALAREQESS GIPELDFSLR ILVLGKTGVG KSATINSIFG QPKSETDAFR PGTDRIEEVM GTVSGVKVTF IDTPGFHPLS 101: SSSTRKNRKI LLSIKRYVKK RPPDVVLYLD RLDMIDMRYS DFSLLQLITE IFGAAIWLNT ILVMTHSAAT TEGRNGQSVN YESYVGQRMD VVQHYIHQAV 201: SDTKLENPVL LVENHPSCKK NLAGEYVLPN GVVWKPQFMF LCVCTKVLGD VQSLLRFRDS IGLGQPSSTR TASLPHLLSV FLRRRLSSGA DETEKEIDKL 301: LNLDLEEEDE YDQLPTIRIL GKSRFEKLSK SQKKEYLDEL DYRETLYLKK QLKEECRRRR DEKLVEEENL EDTEQRDQAA VPLPDMAGPD SFDSDFPAHR 401: YRCVSAGDQW LVRPVYDPQG WDRDVGFDGI NIETAAKINR NLFASATGQV SRDKQRFTIQ SETNAAYTRN FREQTFSVAV DLQSSGEDLV YSFQGGTKLQ 501: TFKHNTTDVG VGLTSFGGKY YVGGKLEDTL LVGKRVKLTA NAGQMRGSGQ TANGGSFEAC IRGRDYPVRN EQIGLTMTAL SFKRELVLNY GLQTQFRPAR 601: GTNIDVNINM NNRKMGKINV KLNSSEHWEI ALISALTMFK ALVRRSKTEM TEENEEEKIV NFLVS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)