AT5G19640.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.748 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 1.5 (TAIR:AT1G32450.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:6636460..6638590 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67467.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.41 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.23 | ||||||||||||||||||||||||||||||||||||||||
| Length | 609 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAMDPRNNG NVAPLNERER AENLEVREVV EVQDDQSVVS LMSNDSDLQK KMMKKEEKKN GGWTNAIILL VNQGLATLAF FGVGVNLVLF LTRVMGQGNA 101: EAANNVSKWT GTVYMFSLVG AFLSDSYWGR YLTCTIFQVI FVIGVGLLSF VSWFFLIKPR GCGDGDLECN PPSSLGVAIF YLSVYLVAFG YGGHQPTLAT 201: FGADQLDDDK NSKAAFFSYF YFALNVGALF SNTILVYFED KGLWTEGFLV SLGSAIVALV AFLAPTRQYR YVKPCGNPLP RVAQVFVATA RKWSVVRPGD 301: PHELYELEGP ESAIKGSRKI FHSTKFLFLD RAAVITENDR NGTRSNAWRL CSVTQVEEAK CVMKLLPIWL CTIIYSVIFT QMASLFVEQG DVMNAYVGKF 401: HIPAASMSVF DIFSVFVSTG IYRHIIFPYV RPTELMRMGI GLIIGIMAMV AAGLTEIQRL KRVVPGQKES ELTILWQIPQ YVLVGASEVF MYVGQLEFFN 501: GQAPDGLKNL GSSLCMASMA LGNYVSSLMV NIVMAITKRG ENSPGWIPEN LNEGHMDRFY FLIAALAAID FVVYLIFAKW YQPISHDEDS IKGGSGGSLK 601: KTVSELEQV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)