AT5G19420.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.634 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; FUNCTIONS IN: chromatin binding, zinc ion binding, Ran GTPase binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, FYVE-type (InterPro:IPR000306), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Zinc finger, FYVE-related (InterPro:IPR017455), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Pleckstrin homology-type (InterPro:IPR011993), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (TAIR:AT5G12350.1). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:6547945..6552981 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 124683.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.09 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.54 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1139 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MWSGFRDCTR NGRMTPSDLS RAGPVTRDIE QLKIELYSTF GVSKLDSSYI LENKNALHAI TALKKGAYLL KYGRRGKPKF CPFRLSNDES VLIWFSGKEE 0101: KHLKLSHVSR IISGQRTPIF QRYPRPEKEY QSFSLIYDER SLDLICKDKD EAEVWFSGLK ALISRCHQRK WRTESRSDGT PSEANSPRTY TRRSSPLHSP 0201: FSSNESFQKE GSNHLRLHSP YESPPKNGVD KAFSDMSLYA VPPKGFFPPG SATMSVHSLS SGGSDTLHGH MKGMGMDAFR VSLSSAISSS SHGSGHDDGD 0301: TLGDVFMWGE GIGEGVLGGG NHRVGSSLEI KMDSLLPKAL ESTIVLDVQN IACGGQHAVL VTKQGESFSW GEESEGRLGH GVDSNVQHPK LIDALNTTNI 0401: ELVACGEYHS CAVTLSGDLY TWGKGDFGIL GHGNEVSHWV PKRVNFLMEG IHVSSIACGP YHTAVVTSAG QLFTFGDGTF GVLGHGDRKS VFIPREVDSL 0501: KGLRTVRAAC GVWHTAAVVE VMVGSSSSSN CSSGKLFTWG DGDKSRLGHG DKEPKLVPTC VAALVEPNFC QVACGHSLTV ALTTSGHVYT MGSPVYGQLG 0601: NPHADGKVPT RVDGKLHKSF VEEIACGAYH VAVLTSRTEV YTWGKGSNGR LGHGDADDRN SPTLVESLKD KQVKSIACGS NFTAAVCLHK WASGMDQSMC 0701: SGCRQPFNFK RKRHNCYNCG LVFCHSCSNK KSLKACMAPN PNKPYRVCDR CFNKLKKAME TDPSSHSSLS RRESVNQGSD AIDRDEKLDT RSDGQLARFS 0801: LLEPMRQVDS RSKKNKKYEF NSSRVSPIPS GGSHRGSLNI TKSFNPTFGS SKKFFSASVP GSRIASRATS PISRRPSPPR STTPTPTLSG LTTPKIVVDD 0901: TKRSNDNLSQ EVVMLRSQVE NLTRKAQLQE VELERTTKQL KEALAIASEE SARCKAAKEV IKSLTAQLKD MAERLPVGSA RTVKSPSLNS FGSSPDYAAP 1001: SSNTLNRPNS RETDSDSLTT VPMFSNGTST PVFDSGSYRQ QANHAAEAIN RISTRSKESE PRNENEWVEQ DEPGVYITLT ALAGGARDLK RVRFSRKRFS 1101: EKQAEEWWAE NRGRVYEQYN VRIVVDKSSV GVGSEDLGH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)