AT5G19350.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.782 What is SUBAcon? |
|
||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||
| Description (TAIR10) | protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein | ||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||
| Computational Description (TAIR10) |
RNA-binding (RRM/RBD/RNP motifs) family protein; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein 45A (TAIR:AT5G54900.1); Has 29846 Blast hits to 17541 proteins in 840 species: Archae - 12; Bacteria - 2412; Metazoa - 15092; Fungi - 3490; Plants - 6065; Viruses - 0; Other Eukaryotes - 2775 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
|
||||||||||||||||
| Coordinates (TAIR10) | chr5:+:6518978..6521295 | ||||||||||||||||
| Molecular Weight (calculated) | 46168.90 Da | ||||||||||||||||
| IEP (calculated) | 5.43 | ||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||
| Length | 421 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAMMHPPQPP QGSYHHPQTL EEVRTLWIGD LQYWVDENYL TSCFSQTGEL VSVKVIRNKI TGQPEGYGFI EFISHAAAER TLQTYNGTQM PGTELTFRLN 101: WASFGSGQKV DAGPDHSIFV GDLAPDVTDY LLQETFRVHY SSVRGAKVVT DPSTGRSKGY GFVKFAEESE RNRAMAEMNG LYCSTRPMRI SAATPKKNVG 201: VQQQYVTKVT VPSAVAAPVQ AYVAPPESDV TCTTISVANL DQNVTEEELK KAFSQLGEVI YVKIPATKGY GYVQFKTRPS AEEAVQRMQG QVIGQQAVRI 301: SWSKNPGQDG WVTQADPNQW NGYYGYGQGY DAYAYGATQD PSVYAYGGYG YPQYPQQGEG TQDISNSAAG GVAGAEQELY DPLATPDVDK LNAAYLSVHA 401: SAILGRPMWQ RTSSLTSQLG K |
||||||||||||||||
| See Also |
|
||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)