AT5G19330.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.720 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat protein interacting with ABF2 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes an armadillo repeat protein involved in the abscisic acid response. The protein interacts with a transcription factor, ABF2, which controls ABA-dependent gene expression via the G-box-type ABA-responsive elements. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ARM repeat protein interacting with ABF2 (ARIA); FUNCTIONS IN: protein binding; INVOLVED IN: response to salt stress, negative regulation of seed germination, response to abscisic acid stimulus; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), Armadillo-like helical (InterPro:IPR011989), BTB/POZ fold (InterPro:IPR011333), Armadillo (InterPro:IPR000225), BTB/POZ-like (InterPro:IPR000210), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARMADILLO BTB protein 1 (TAIR:AT5G13060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:6508300..6512701 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69613.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.62 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||
| Length | 636 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDQQPERREG RSFPERKGQK RKLEEGAAAV EDREISAVST DGGQALLSEV AAQVSVLNSA FSWQESDRAA AKRATQVLAE LAKNAEDLVN VIVDGGAVPA 101: LMTHLQAPPY NDGDLAEKPY EHEVEKGSAF ALGLLAIKPE YQKLIVDKGA LPHLVNLLKR NKDGSSSRAV NSVIRRAADA ITNLAHENSS IKTRVRVEGG 201: IPPLVELLEF SDSKVQRAAA GALRTLAFKN DDNKNQIVEC NALPTLILML GSEDAAIHYE AVGVIGNLVH SSPHIKKEVL TAGALQPVIG LLSSCCPESQ 301: REAALLLGQF ASTDSDCKVH IVQRGAVRPL IEMLQSPDVQ LKEMSAFALG RLAQDAHNQA GIAHSGGLGP LLKLLDSRNG SLQHNAAFAL YGLADNEDNV 401: SDFIRVGGIQ KLQDGEFIVQ VLRHLLYLMR ISEKSIQRRV ALALAHLWLE LLLGLLGSLN TKQQLDGAAA LYKLANKSMA LSPVDAAPPS PTQRVYLGEQ 501: YVNNATLSDV TFLVEDAFRA MFDGGYREKD ARDIEIPNIK WEVFELMMRF IYTGSVDITN EISKDLLRAA DQYLLEGLKR LCEYTIAQYL TKSDTVTLNM 601: KGYYVGKYRR HVRAIRSIPC DVAEASLYHV HPGAFR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)