AT5G19170.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein of Unknown Function (DUF239) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein of Unknown Function (DUF239); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT5G18460.1); Has 730 Blast hits to 692 proteins in 28 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 10; Plants - 705; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:6445245..6447305 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 44115.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.43 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||
| Length | 391 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESLTMLLIM GHFIQLGVSV IPVSTIYSPD GDLIDCIYRT DQRAFDHPLL RNHIIQEYPT NMPQIEKSVQ ENWQIWHDTG EKCPAETIPM RRELNPVSHQ 101: KQHVHVPKEY EVANRATSGH KYAIAYMINR TNVYGTRATF NVWTPKVESA YDFSLAQIWL ASGSYETADL NTVEAGWQVS RSRYNDSQAR LFTYWTADGY 201: NKTGCYGLDL PGFVQTSSTI AIGAAIGRTS TYGGTQFDMT LQIWKDLFSG HWWLALGPNL VPIGYWPAVI FTTLSDYATA VEWGGEVLYR NLSSVNTVAQ 301: MGSGEYADKG YGKAAYFCNL KVAENNHTLL PVQDFGVQAD YPEYYTVKKS SNRNCGNHFY FGGPGPQRSE AVRGTTVFGF CFLFYLSVFC F |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)