AT5G19130.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.853 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GPI transamidase component family protein / Gaa1-like family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
GPI transamidase component family protein / Gaa1-like family protein; FUNCTIONS IN: GPI-anchor transamidase activity; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosylphosphatidylinositol:protein transamidase complex, GAA1 component (InterPro:IPR017063), Gaa1-like, GPI transamidase component (InterPro:IPR007246); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:6416128..6418993 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 76814.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.20 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.24 | ||||||||||||||||||||||||||||
| Length | 696 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAVNRDNEE EVKTDDGSPK IKPRPIVRLG IFLIAHSPVF SVVFSAAGVL ALLLLPLLAK NTYISENALM PGSARSMLSN RDVSDGSKLV KDIKNFRLNH 101: EGQVQKLIGK YMSDMGAEVS YQKFHPEGNQ FHPLHFFSGP DSYTLLENVS CASYGVNVAG IIRAPRGDGK ESIVLVTPYD FINGGDYEDL SLGIVSSLFS 201: LLSRVTWLSK DIIWLVADSR YGDYRPVAAW LTEYHSPSFK VSDLLKCDEQ NTADNFRRAG TMAAALVLKV DGRSEKFEDT LSIYAEASNG QMPNLDLINV 301: VNYLAVHRQG FYVKVEKVVS LLSSSWLKIF GEIFEAVGKL AHMLNPDWNF GIPAADYLEG SATLASSLYS QALGIPTGPH GAFRDYQVDA ITLKVSPRFP 401: PDSKTRQHDF FLRGARLLEG TIRSVNNLLE KFHQSFFLYM LTSPSKFISV GVYMIAFALL VAPLPMVAAS LYIDGCKSLT NSTHNPTENF KSWKWLDAAK 501: QVFTLHLLGF IVTLLPYFIC QVPGQHSPTN RSIMWGTTSS SLLLITFVTM PGCSPFSSRL HGTNWAILKS VTISAAFIGL CLMSIINFAT AEIGALLLVP 601: TCLMAQPIKP ALRSRRLKSL LGAFCSIVLL TIGFPVMFFA ISKGLLGEGL VGLSLGGEFW TWLESLWAWK SATYLYIGMV HLPCWLLCLC ILFHPS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)