AT5G19090.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.909 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Heavy metal transport/detoxification superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT3G06130.2); Has 50176 Blast hits to 18818 proteins in 1086 species: Archae - 85; Bacteria - 11227; Metazoa - 17638; Fungi - 3230; Plants - 9788; Viruses - 1123; Other Eukaryotes - 7085 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:6387910..6389855 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49386.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.96 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.93 | ||||||||||||||||||||||||||||||||
| Length | 465 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSKEEFMKIQ TCVLKVNIHC DGCKQKVKKI LQKIEGVFTT KIDAELGKVT VSGNVDPSVL IKKLLKSGKH AEIWGAPKGG SNNNQNQPNL ANQFKAMQID 101: HGGKGGGGGG GGPANNNKGQ KIGGGGGGGG GGGGGGGGGP PKMVIPQLTP QQMQQLNPQQ LQQLQQLQQM KGFQDLKLPP QLKGGPGPGP GSVPMNKNPQ 201: MPNNPNQKAV KFNVPDDDDE EDFSDEFDDE FDEDDDEFDD DLEDDEFDDH PPPPNKMKPM MGGGNMIMPN NMMPNMMMPN AQQMLNAHKN GGGGGGPQSM 301: SMPMGGAMGG PMGSLPQMGG GPGPMSNNMQ AVQGLPAMGP GGGGGGGPSA EAPPGYFQGQ VSGNGGGGQD SMPGNPYLQQ QQQQQQQQYL AAVMNQQRSM 401: GNERFQPMMY ARPPPAVNYM PPQPQPHQQH PYPYPYPYPP QYPPHNGDQY SDYFNDENTS SCNIM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)