AT5G19000.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.978 What is SUBAcon? |
|
||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||
| Description (TAIR10) | protein_coding : BTB-POZ and MATH domain 1 | ||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||
| Computational Description (TAIR10) |
BTB-POZ and MATH domain 1 (BPM1); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), BTB/POZ (InterPro:IPR013069), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 2 (TAIR:AT3G06190.1). | ||||||||||||
| Protein Annotations |
|
||||||||||||
| Coordinates (TAIR10) | chr5:+:6342563..6344641 | ||||||||||||
| Molecular Weight (calculated) | 48586.40 Da | ||||||||||||
| IEP (calculated) | 7.71 | ||||||||||||
| GRAVY (calculated) | -0.01 | ||||||||||||
| Length | 442 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGTTRVCSEV SSGSSKSLSQ SLTVSTSTTE TVNGFHEFKI CGYSLAKGVG VGKYVASDTF MVGGYSWAIY FYPDGKSPED NSSYVSLFIA LASEGADVRA 101: LFELTLVDQS GNGKHKVHSH FGRALDSGPY TLKYRGSMWG YKRFFRRSSL ESSDYLKENS LLVRCRVGVV KSVTEGPRYY NIPVPVSNLG QQLGNLLESG 201: KGCDVVFQVD GETFNAHKLV LATRSPVFNA QLFGPLGDRN TKCITIEDME APIFKVLPLT LLLIVYSRMY HPGSSPGALL LFSSLLTRDK VLLHFIYWDE 301: LPDMQELIGT DSTLASTLVA QHLLAAADRY ALERLKAICE SKLCEGVAIN TVATTLALAE QHHCLQLKAV CLKFVALPEN LKAVMQTDGF DYLKESCPSL 401: LTELLQYVAR LSEHSVIVSG HRKEIFADGC DASGRRVKPR LH |
||||||||||||
| See Also |
|
||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)