AT5G18700.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.998 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein kinase family protein with ARM repeat domain | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a microtubule-associated kinase-like protein RUNKEL (RUK). Contains a putative serine/threonine kinase domain and a microtubule-binding domain. RUK directly binds to microtubules in vitro and colocalizes with mitotic preprophase band, spindle, and phragmoplast in vivo. Required for cell plate expansion in cytokinesis. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein kinase family protein with ARM repeat domain; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Armadillo-like helical (InterPro:IPR011989), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G33940.2); Has 133671 Blast hits to 131461 proteins in 4761 species: Archae - 230; Bacteria - 15366; Metazoa - 49337; Fungi - 13216; Plants - 32681; Viruses - 728; Other Eukaryotes - 22113 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:6235387..6240733 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 152292.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.50 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1366 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MNQYHIYEAI GHGKCSTVYK GRKKKTIEYF ACKSVDKSRK NKVLQEVRIL HSLNHPNVLK FYAWYETSAH MWLVLEYCVG GDLRTLLQQD CKLPEESIYG 0101: LAYDLVIALQ YLHSKGIIYC DLKPSNILLD ENGHIKLCDF GLSRKLDDIS KSPSTGKRGT PYYMAPELYE DGGIHSFASD LWALGCVLYE CYTGRPPFVA 0201: REFTQLVKSI HSDPTPPLPG NASRSFVNLI ESLLIKDPAQ RIQWADLCGH AFWKSKINLV QLPTQPAFDD MIGINTKPCL SERNGDRPNK TPPKYREKDR 0301: KGGSKQNENS IQGSKGHETP IKGTPGGSKA QAKLPSRATE EKHGGRPAAN RQVNILRLSR IAKANLQKEN EKENYRRPLP NSNENCAEVK IDNTDMELDF 0401: DENNDDEGPD ESEGTENTSC AQEERVMSHN ENHRRQRVVS SNVPDENSSA NETPTLGEAR DCHEDQSEPM DMSAAPPSAS PQLKTHRGRE TSGVAVNHDS 0501: SKAPTSLTDV FWHISDLSVR PVMPSRKSDK EAVHSLSFET PQPSDFSKKG KQELEPLNNR IITVLSGSSS GLSEKQNLIR YLETLSTNAD AANILTNGPI 0601: MLVLVKVLRL SKTPAFRVQI ASLIGLLIRH STSIEDDLAN SGILDSLTNG LRDKHEKVRR FSMAALGELL FYISTQNEHK DFKPPESPSK ETRSASGWQV 0701: SNALISLVSS VLRKGEDDLT QVYALRTIEN ICSQGAYWAT RFSSQDLISN LCYIYKATGK QESMRQTAGS CLVRLARFNP PCIQTVVEKL SLKEIASSFV 0801: KGSAREQQVC LNLLNMAMIG SHTFTSFGRH LVTLTEEKNL FPSLLSIIEQ GTEVLRGKAL LFVAFLCKNS RRWLTNFFCN ARFLPVVDRL AKEKDSYLQQ 0901: CLEAFVNVIA SIIPGMLDTI TNDIQQLMTG RRHGPVSPLN SRAPVKTNAH LFPVVLHLLG SSSFKNKMVT PQVLRQLANL TKLVEASFQG RDDFRVTLLQ 1001: VLECITGDAP LVTQNGEIII REILPSLAAI YNGNKDGDAR FLCLKIWFDS LTILLTECTE IEQQISEDLK SISNSHFLPL YPALIQDEDP IPAYAQKLLV 1101: MLVEFDYIKI SNLLRHNTVS QCFEFLLGDL SSANVNNVKL CLALASAPEM ESKLLSQLKV VRRIGNLLEF VNAKDMEDFL EPTLSLCRAF LLRSLGNKKG 1201: LSSNYTKEPT LLSEASFTFE VDPQECIRDI ADFGSNIGLF LHFAGLDDDT SIAVADIASE CVVLLLKAAS REATTGFLTN LPKITPILDS WRRRKSTELH 1301: LLVLKRVLHC LGYACKQYLS QAMILSISGH DVSKINAIVS EMKNSDAAGL NSIASLVAME LQRLPR |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)