AT5G18350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.741 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G18370.1); Has 34965 Blast hits to 21666 proteins in 724 species: Archae - 44; Bacteria - 2561; Metazoa - 2994; Fungi - 173; Plants - 27913; Viruses - 8; Other Eukaryotes - 1272 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:6074069..6078569 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 141236.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.25 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1245 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MQPNRASSSL SSTPTRTWTH HVFLSFRGED VRKGFLSHIQ KEFERKGIFP FVDTKMKRGS SIGPVLSDAI IVSKIAIVLL SKNYASSTWC LNELVNIMKC 0101: REEFGQTVMT VFYEVDPSDV RKQTGDFGIA FETTCVGKTE EVKQSWRQAL IDVSNIVGEV YRIWSKESDL IDKIAEDVLD ELNYTMSRDF DGYVGIGRHM 0201: RKMKSLLCLE SGDVRMIGIV GPPGIGKTTI ARALRDQISE NFQLTAFIDD IRLTYPRRCY GESGLKPPTA FMNDDRRKIV LQTNFLSEIL NQKDIVIHNL 0301: NAAPNWLKDR KVLVILDDVD HLEQLDAMAK ETGWFGYGSR IIITTQDRKL LKAHNIDYIY EVGLPRKDDA LQIFCLSAFG QNFPHDDFQY LACEVTQLAG 0401: ELPLGLKVLG SYLKGMSLEE WKNALPRLKT CLDGDIEKTL RYSYDALSRK DQALFLHIAC LFRGYEVGHV KQWLGKSDLD VDHGLDVLRQ KSLISIDMGF 0501: LNMHSLLQQL GVEIVRNQSS QEPRERQFLV DVNDISDVFT YNTAGTKSIL GIRLNVPEIE EKIVIDELVF DGMTNLQFLF VNEGFGDKLS LPRGLNCLPG 0601: KLRVLHWNYC PLRLWPSKFS ANFLVELVMR GNNFEKLWEK ILPLKSLKRM DLSHSKDLKE IPDLSNATNL EELDLSSCSG LLELTDSIGK ATNLKRLKLA 0701: CCSLLKKLPS SIGDATNLQV LDLFHCESFE ELPKSIGKLT NLKVLELMRC YKLVTLPNSI KTPKLPVLSM SECEDLQAFP TYINLEDCTQ LKMFPEISTN 0801: VKELDLRNTA IENVPSSICS WSCLYRLDMS ECRNLKEFPN VPVSIVELDL SKTEIEEVPS WIENLLLLRT LTMVGCKRLN IISPNISKLK NLEDLELFTD 0901: GVSGDAASFY AFVEFSDRHD WTLESDFQVH YILPICLPKM AISLRFWSYD FETIPDCINC LPGLSELDVS GCRNLVSLPQ LPGSLLSLDA NNCESLERIN 1001: GSFQNPEICL NFANCINLNQ EARKLIQTSA CEYAILPGAE VPAHFTDQDT SGSLTINITT KTLPSRLRYK ACILLSKGNI NLEDEDEDSF MSVSCHVTGK 1101: QNILILPSPV LRGYTDHLYI FDYSFSLHED FPEAKEATFS ELMFDFIVHT KSWNVKSCGV HLFEEKNLPE KNEVTPCVCV ISLKQMDLSK SENLKEIPDL 1201: SKAINIEELC LSYCGSLVPR SRLYHTSLQA AFSEFIRINL QQERE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)