AT5G18340.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: stem, sperm cell, flower, leaf; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G18320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:6070640..6072198 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50794.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.52 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 456 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADSTADATE TNADTLTLRR ELKKVLTENL NDGGVKDRVE TVKSIDEAIR ILNRLKIVES KKRKRESDSS SVEVPKEFKC TLSKTIMIDP VIIFSGQTYE 101: KRYITEWLNH DLTCPTAKQV LYRVCLTPNH LINELITRWC LANKYDRPAP KPSDIDYVTE LFTDGIESLL QRISSPSSSV ADQTEAAKEL ALQTEKFVNV 201: RDFFIKELPD SITRLLTPLS VLGDEVDSNP ELQENIVTAL FNMSTFEKNK TVLAENHQVI PLLAKSMKQG SVVTRRNATL TLASLSDIDS NKIIIGNSVA 301: LKALIDLIGE LDDLSATHDA LCAVIDLCCD ERENWKKAIS LGLAPAAIKN IKARRNLFES LAALALISPH ERVIQEVANL GVIYDLLSIL RKTSCMVTCE 401: NAVVIVGNMY AKSRERSIKK ILAEEENQHK TFTKIATQGS VVAVMKAQGI LQCINY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)