AT5G18320.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G18340.1); Has 2654 Blast hits to 2388 proteins in 199 species: Archae - 0; Bacteria - 18; Metazoa - 94; Fungi - 232; Plants - 2125; Viruses - 3; Other Eukaryotes - 182 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:6064431..6066186 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50875.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.44 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 458 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADSTETNAD TLRRELQKVL TEILNDGGGN DRDETEAFSG VVKAIDEAVR ILTCLRKVES KIPESDISPV EVPKEFICTL SNTIMIEPVI IASGQTYEKR 101: YITEWLKHER TCPKTKQVLS HRLWIPNHLI SDLITQWCLV NKYDHQKPSD ELVAELFTSD IEALLQRVSS SSSVADQIEA AKELRHQTKK FPNVRVFFVA 201: GIHDSITRLL SPLSTLDEAV DSSLELQENI VTALFNLSIL ESNKTVIAEN CLVIPLLTKS LKQGTDETRR NAAATLSSLS AIDSNKIIIG NSEAVKALID 301: LIEEGDLLAT KEATSTVFNL CIVLENKGKV VSAGLIHAAT KKIKAGSNVD ELLSLLALIS THNRAVEEMD KLGFIYDLFS ILRKPSSLLT GENAVVIVFN 401: MYDRNRDRSR LKVVGEEENQ HGTFTKLAKQ GSVRAARKAQ GILQWIKRFV TGKEPQRA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)