AT5G18000.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : VERDANDI | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes VERDANDI (VDD), a putative transcription factor belonging to the reproductive meristem (REM) family. VDD is a direct target of the MADS domain ovule identity complex. Mutation in VDD affects embryo sac differentiation. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
VERDANDI (VDD); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, embryo sac development, double fertilization forming a zygote and endosperm; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G18090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:5960071..5961473 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35728.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.24 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.78 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 307 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVKNKAFFGQ IMEERDNPAF FKILRREDHS TEMMRMIPHH LIRSISDKSS SFKMVLRVPW GRSWQVKISK NPNFHYMEDR GWNQFVNDNG LGENEYLTFT 101: HEANMCFNVT IFEADGTEML RPRKTITSSS GRNKREERKS IYKDVKKEEE IESWSESSHP CHKTAESTSG RLTQKQELNL RKKEADKTEK SKTSKKKKVE 201: TVSNDSEAGT SSLIPEFKLT IKKSHLLFLG IPKKFVDMHM PTETTMFKIH YPRGKKSWDV TYVVTDVQSR FSGGWSRLAK ELGLLVGDVC TFKLIKPTEM 301: RVKVSKE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)