AT5G17960.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.689 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT2G17600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:5945665..5947464 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68945.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.24 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||||||
| Length | 599 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEEPKNIHPA ALYTKGCRLA HPTHPHTLSP KLSKNTKSNC FTCGKQVSTS SRGFHYHCTI CDVDFHEECV NIPRKILHPF HLQHPLFLTY GKHDNIIDGS 101: NMSEQGPYED QGTSDPGKSG WGNIFDNCTW CGKYIPTPSS HPRMTVFYRC SICNFCLDTM CTQTKPPLTI ENPKGHHHSL VLFPRPLLVP CDACGLVNAS 201: EASYACFQCN YVVHQYCVDL PRVIKITRHP HRLSFSPYLP PPNSLCRVCY KTVDIKYGQY SCKDEDCSYV LHTKCATHVM VWDGKELEWE PEEPGVIEDI 301: APFKNVGDGL IEHFSHEHHL KLEKYDSVRD ARKQCEACVL PIHLHDFYKC MQCDFFLHVV CACLPKKVDH ALHNHSIILD PSPLPTDGNL QCSACSRTST 401: GFKYKCAEKN CKIHWFKIDV PCFLVPEYSI DKVHEHPLFI APFNYDYEPF RCNGCKRGLT KNRLQCSTLC EYSICYECAT IPSELHYKYD KHPLTLCYGE 501: DTDDKYWCEE CEKEVNTSEW FYTCNECCTT IHRNCLFGFH VYLKPGNTFK YHNRRMVEVL DNKSSTRPVC SRCEDRCQGS IYFKVDVRNV CASCLLKCL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)