AT5G17890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DA1-related protein 4 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein that appears to be involved in defense responses. Contains TIR, NB-LRR and LIM domains. A gain of function allele exhibits cold dependent phenotypes including apparent activation of defense responses and an increased freezing tolerance. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DA1-related protein 4 (DAR4); FUNCTIONS IN: zinc ion binding, ATP binding; INVOLVED IN: response to cold, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Protein of unknown function DUF3633 (InterPro:IPR022087); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G36140.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:5917015..5923160 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 185148.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.34 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1613 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEPPAARVTP SIKADCSHSV NIICEETVLH SLVSHLSAAL RREGISVFVD ACGLQETKFF SIKQNQPLTD GARVLVVVIS DEVEFYDPWF PKFLKVIQGW 0101: QNNGHVVVPV FYGVDSLTRV YGWANSWLEA EKLTSHQSKI LSNNVLTDSE LVEEIVRDVY GKLYPAERVG IYARLLEIEK LLYKQHRDIR SIGIWGMPGI 0201: GKTTLAKAVF NHMSTDYDAS CFIENFDEAF HKEGLHRLLK ERIGKILKDE FDIESSYIMR PTLHRDKLYD KRILVVLDDV RDSLAAESFL KRLDWFGSGS 0301: LIIITSVDKQ VFAFCQINQI YTVQGLNVHE ALQLFSQSVF GINEPEQNDR KLSMKVIDYV NGNPLALSIY GRELMGKKSE METAFFELKH CPPLKIQDVL 0401: KNAYSALSDN EKNIVLDIAF FFKGETVNYV MQLLEESHYF PRLAIDVLVD KCVLTISENT VQMNNLIQDT CQEIFNGEIE TCTRMWEPSR IRYLLEYDEL 0501: EGSGETKAMP KSGLVAEHIE SIFLDTSNVK FDVKHDAFKN MFNLKFLKIY NSCSKYISGL NFPKGLDSLP YELRLLHWEN YPLQSLPQDF DFGHLVKLSM 0601: PYSQLHKLGT RVKDLVMLKR LILSHSLQLV ECDILIYAQN IELIDLQGCT GLQRFPDTSQ LQNLRVVNLS GCTEIKCFSG VPPNIEELHL QGTRIREIPI 0701: FNATHPPKVK LDRKKLWNLL ENFSDVEHID LECVTNLATV TSNNHVMGKL VCLNMKYCSN LRGLPDMVSL ESLKVLYLSG CSELEKIMGF PRNLKKLYVG 0801: GTAIRELPQL PNSLEFLNAH GCKHLKSINL DFEQLPRHFI FSNCYRFSSQ VIAEFVEKGL VASLARAKQE ELIKAPEVII CIPMDTRQRS SFRLQAGRNA 0901: MTDLVPWMQK PISGFSMSVV VSFQDDYHND VGLRIRCVGT WKTWNNQPDR IVERFFQCWA PTEAPKVVAD HIFVLYDTKM HPSDSEENHI SMWAHEVKFE 1001: FHTVSGENNP LGASCKVTEC GVEVITAATG DTSVSGIIRE SETITIIEKE DTIIDEEDTP LLSRKPEETN RSRSSSELQK LSSTSSKVRS KGNVFWKWLG 1101: CFPLQPKNLR SRSRRTTALE EALEEALKER EKLEDTRELQ IALIESKKIK KIKQADERDQ IKHADEREQR KHSKDHEEEE IESNEKEERR HSKDYVIEEL 1201: VLKGKGKRKQ LDDDKADEKE QIKHSKDHVE EEVNPPLSKC KDCKSAIEDG ISINAYGSVW HPQCFCCLRC REPIAMNEIS DLRGMYHKPC YKELRHPNCY 1301: VCEKKIPRTA EGLKYHEHPF WMETYCPSHD GDGTPKCCSC ERLEHCGTQY VMLADFRWLC RECMDSAIMD SDECQPLHFE IREFFEGLHM KIEEEFPVYL 1401: VEKNALNKAE KEEKIDKQGD QCLMVVRGIC LSEEQIVTSV SQGVRRMLNK QILDTVTESQ RVVRKCEVTA ILILYGLPRL LTGYILAHEM MHAYLRLNGY 1501: RNLNMVLEEG LCQVLGYMWL ECQTYVFDTA TIASSSSSSR TPLSTTTSKK VDPSDFEKRL VNFCKHQIET DESPFFGDGF RKVNKMMASN NHSLKDTLKE 1601: IISISKTPQY SKL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)