AT5G17850.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.992 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Sodium/calcium exchanger family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Sodium/calcium exchanger family protein; FUNCTIONS IN: cation:cation antiporter activity, calcium:sodium antiporter activity; INVOLVED IN: cation transport, transmembrane transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837); BEST Arabidopsis thaliana protein match is: calcium exchanger 7 (TAIR:AT5G17860.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:5899253..5900932 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61184.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.82 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.58 | ||||||||||||||||||||||||||||||||||||||||
| Length | 559 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGFSFSSNRF GYLTVTFLLV ISCLLLGFFT NPVDSSALRP KSEHDCSALK HFHDYKSKCA YLKSIDPCAS QGFFDYLSFL YCNFEGFPIL GQFLLFLWLL 101: LLFYLLGHTA SEYFCSSLES LSKLLNLSPT VAGVTLLSLG NGAPDLFASL VSFMGESKGT YDVGLNTVVG GSGFVTCVVV GIISISLHKR RVRIERAAFI 201: RDICFFCAAI GSLALILVYG KINFWGALGF CSLYAVYVAF VVLSWRFGGD QGAESDLESI HKRGSLSEPI LQRDGLEEIE DGVVNGEHQI VDDDDDHQRY 301: YYWKRLVIWA ITLPLNLPRI LTIPVVSEDK WSKPLAVASV TFAPVLLSFL WNWKRKPTSF EAGVVYLIGC LIGIALGFIA GATTKKLTPP KKWLLPWLAG 401: GFVMSMTWSY ISAQELVALL TSLGYIFGVS PSILGLTVLA WGNSIGDLIT NLTMALHDGN EGAQVAVSGC YAGPIFNTLF ALGISLVGCA WEAYPLSIVI 501: KTDPRLLESL GFLVAGLVWS FLVLFSNRMR LGGVMGIGLL VIYLASLSLR IMQTVGDAH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)