AT5G17750.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 0.395 endoplasmic reticulum 0.225 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G17740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:5858695..5860041 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44530.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.34 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 392 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVFSKDLPSP ATMFSTYASL AGYIMMIKPM IHTIIPRPIQ NFVFSYIKSF VGSPQAYLSS KISPDASKLR MTRDPNNKNV NLHLSQGEVV SDVYKGIELK 101: WRYLEGRNKK TTVVGEETEE AIVNWQCFEL SFDKKHKDLV VKSYIAYVER KAKVIKEERR IIKMHSYSSY TLRWQSVKFE HPSTFHTMAM TPKLKSSVME 201: DLDRFIKRKD YYKRVGKAWK RSYFLYGPPG TGKSSLVAAM ANYLKFDIYD LQLANVQGDA QLRSLLLATN NSSILLVEDI DCSVDLPTRL QPATTTLGAP 301: KGSTPLTLSG LLNCIDGLWS SCGDERIVIF TTNNKEVLDP ALLRPGCMDM HIYLGHCSFE GFKILASNYL GMPHDSDDPH RLYPDIKRLI DG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)