AT5G17680.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.997 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : disease resistance protein (TIR-NBS-LRR class), putative | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) (TAIR:AT5G11250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:5822999..5827153 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 147364.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.85 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1294 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASLPSSSSS SSSTVWKTDV FVSFRGEDVR KTFVSHLFCE FDRMGIKAFR DDLDLQRGKS ISPELIDAIK GSRFAIVVVS RNYAASSWCL DELLKIMECN 0101: KDTIVPIFYE VDPSDVRRQR GSFGEDVESH SDKEKVGKWK EALKKLAAIS GEDSRNWDDS KLIKKIVKDI SDKLVSTSWD DSKGLIGMSS HMDFLQSMIS 0201: IVDKDVRMLG IWGMGGVGKT TIAKYLYNQL SGQFQVHCFM ENVKEVCNRY GVRRLQVEFL CRMFQERDKE AWSSVSCCNI IKERFRHKMV FIVLDDVDRS 0301: EQLNELVKET GWFGPGSRII VTTRDRHLLL SHGINLVYKV KCLPKKEALQ LFCNYAFREE IILPHGFEEL SVQAVNYASG LPLALRVLGS FLYRRSQIEW 0401: ESTLARLKTY PHSDIMEVLR VSYDGLDEQE KAIFLYISCF YNMKQVDYVR KLLDLCGYAA EIGITILTEK SLIVESNGCV KIHDLLEQMG RELVRQQAVN 0501: NPAQRLLLWD PEDICHLLSE NSGTQLVEGI SLNLSEISEV FASDRAFEGL SNLKLLNFYD LSFDGETRVH LPNGLSYLPR KLRYLRWDGY PLKTMPSRFF 0601: PEFLVELCMS NSNLEKLWDG IQPLRNLKKM DLSRCKYLVE VPDLSKATNL EELNLSYCQS LVEVTPSIKN LKGLSCFYLT NCIQLKDIPI GIILKSLETV 0701: GMSGCSSLKH FPEISWNTRR LYLSSTKIEE LPSSISRLSC LVKLDMSDCQ RLRTLPSYLG HLVSLKSLNL DGCRRLENLP DTLQNLTSLE TLEVSGCLNV 0801: NEFPRVSTSI EVLRISETSI EEIPARICNL SQLRSLDISE NKRLASLPVS ISELRSLEKL KLSGCSVLES FPLEICQTMS CLRWFDLDRT SIKELPENIG 0901: NLVALEVLQA SRTVIRRAPW SIARLTRLQV LAIGNSFFTP EGLLHSLCPP LSRFDDLRAL SLSNMNMTEI PNSIGNLWNL LELDLSGNNF EFIPASIKRL 1001: TRLNRLNLNN CQRLQALPDE LPRGLLYIYI HSCTSLVSIS GCFNQYCLRK LVASNCYKLD QAAQILIHRN LKLESAKPEH SYFPGSDIPT CFNHQVMGPS 1101: LNIQLPQSES SSDILGFSAC IMIGVDGQYP MNNLKIHCSC ILKDADACEL VVMDEVWYPD PKAFTNMYFG SDHLLLFSRT CTSMEAYSEA LFEFSVENTE 1201: GDSFSPLGEV KKCAVHLISL KDMMQEFSND SDKIQSSDLD LPKAFDDARI LKRRAYETEF LHKEQLNPKR IKFLPVPLAR ERHSKLHQRN VIRK |
||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)