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AT5G17410.2
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.846
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Spc97 / Spc98 family of spindle pole body (SBP) component
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Spc97 / Spc98 family of spindle pole body (SBP) component; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: spindle pole, microtubule organizing center; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: spindle pole body component 98 (TAIR:AT5G06680.1); Has 1351 Blast hits to 1243 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 645; Fungi - 324; Plants - 181; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).
Protein Annotations
BioGrid:16883eggNOG:ENOG410XNREeggNOG:KOG2001EMBL:AF360238
EMBL:AL391142EMBL:AY040037EMBL:CP002688EnsemblPlants:AT5G17410
EnsemblPlants:AT5G17410.1EnsemblPlants:AT5G17410.2entrez:831607ExpressionAtlas:Q9C5H9
GeneID:831607Genevisible:Q9C5H9GO:GO:0000226GO:GO:0000922
GO:GO:0000930GO:GO:0005635GO:GO:0005737GO:GO:0005938
GO:GO:0033566GO:GO:0048229GO:GO:0055028GO:GO:0090063
hmmpanther:PTHR19302hmmpanther:PTHR19302:SF13HOGENOM:HOG000030677IntAct:Q9C5H9
InterPro:IPR007259KEGG:ath:AT5G17410KO:K16569ncoils:Coil
OMA:AQWILGVPANTHER:PTHR19302PaxDb:Q9C5H9Pfam:PF04130
PhylomeDB:Q9C5H9PIR:T51578PRIDE:Q9C5H9PRO:PR:Q9C5H9
ProteinModelPortal:Q9C5H9Proteomes:UP000006548RefSeq:NP_568346.1RefSeq:NP_850838.1
SMR:Q9C5H9STRING:3702.AT5G17410.2TAIR:AT5G17410UniGene:At.25558
UniGene:At.71017UniProt:F4KGZ8UniProt:Q9LF43
Coordinates (TAIR10) chr5:+:5730651..5736415
Molecular Weight (calculated) 77036.90 Da
IEP (calculated) 7.21
GRAVY (calculated) -0.12
Length 679 amino acids
Sequence (TAIR10)
(BLAST)
001: MESMTPISCP TTPRWNQDRP FLTGRFHQET RASSKFADSK RFTLDSSSSS GVEQAIGCYD TPVQELIVID DLLSALVGIE GRYISIKRFH GKEDSIAFQV
101: DPSMDLALQE LAKRIFPLCE YYLLIDQFVE SSSQFKNGLV NHAFAAALRA LLLDYQAMVA QLEHQFRLGR LSIQGLWFYC QPMMGSMRAL AAVIQQASTK
201: QFVGSGVLNL LQSQAKAMAG DNSVRSLLEK MTECASNAYL SILERWVYEG IIDDPYGEFF IAENRSLKKE SLSQDSTAKY WSQRYSLKDT IPGFLANIAA
301: TILTTGKYLN VMRECGHNVQ VPISERSKLT IFGSNHHYLE CIKAAHEFAS IELVNLIKDK YDLVGRLRSI KHYLLLDQGD FLVHFMDIAR EELNKKVHEI
401: SVEKLQSLLD LALRTTAAAA DPRHEDLTCC VDRASLLTTL GMHKDTDSNS IEDPMSITGL ETFSLSYKVQ WPLSIVISKK ALSKYQLIFR FLFHCKHVER
501: QLCGAWQIHQ GIRSMNSKGT AILRSSLLCR SMLKFISSLL HYLTFEVLEP NWHVMHDRLQ STRSVDEVIQ HHDFFLDKCL RGCLLLLPDV LKKMEKLKSV
601: CLQYAAATQW LISSSIDINS QSHPQKTMIR DTTVTESIFN FEREFNSELQ SLGPVLSKGS QAEPYLTHLS QWILGVSKE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)