AT5G16900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat protein kinase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, leaf whorl, sperm cell, sepal, root; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT1G07560.1); Has 168111 Blast hits to 123484 proteins in 4541 species: Archae - 113; Bacteria - 13955; Metazoa - 44789; Fungi - 10304; Plants - 79478; Viruses - 406; Other Eukaryotes - 19066 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:5555254..5559715 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 97257.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.41 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 866 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEDRHRYLFF IFAIIHYVQA QQGFISLDCG LPSNEPPYIE PVTGLVFSSD ADHIPSGISG RIQKNLEAVH IKPYLFLRYF PDGLRNCYTL DVLQNRRYMI 101: KAVFVYGNYD GYNDYPSFDL YLGPNKWVRV DLEGKVNGSV EEIIHIPSSN SLQICLVKTG NSLPFISALE LRLLRNDTYV VQDVSLKHLF RRYYRQSDRL 201: IRYPDDVYDR VWSPFFLPEW TQITTSLDVN NSNNYEPPKA ALTSAATPGD NGTRLTIIWT LDNPDEQIHL YVHFAELEPV GENTDEALRT LFTRTFYFVV 301: NGKISYDESI TPLDLAVSTV ETVVNKCDGG NCSLQLVRSE ASPGVRVPLV NAMEAFTAIK FPHSETNPDD VISIKVIQAT YELSRVDWQG DPCLPQQFLW 401: TGLNCSYMNM STSPRIISLD LSSHKLTGKI VPDIQNLTQL QKLDLSNNKL TGGVPEFLAN MKSLLFINLS NNNLVGSIPQ ALLDRKNLKL EFEGNPKLCA 501: TGPCNSSSGN KETTVIAPVA AAIAIFIAVL VLIIVFIKKR PSSIRALHPS RANLSLENKK RRITYSEILL MTNNFERVIG EGGFGVVYHG YLNDSEQVAV 601: KVLSPSSSQG YKEFKAEVEL LLRVHHINLV SLVGYCDEQA HLALIYEYMA NGDLKSHLSG KHGDCVLKWE NRLSIAVETA LGLEYLHSGC KPLMVHRDVK 701: SMNILLDEHF QAKLADFGLS RSFSVGEESH VSTGVVGTPG YLDPEYYRTY RLTEKSDVYS FGIVLLEIIT NQPVLEQANE NRHIAERVRT MLTRSDISTI 801: VDPNLIGEYD SGSVRKALKL AMSCVDPSPV ARPDMSHVVQ ELKQCIKSEN LRLRTGLNQV IDSKSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)