AT5G16780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SART-1 family | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein belonging to SART-1 family. The gene is expressed in the basal region of the developing embryo during heart stage. Phenotypic analyses of dot2 mutants suggest that this protein plays a role in root, shoot, and flower development. dot2 mutants are dwarved plants that display an aberrant spurred leaf venation pattern and fail to flower. In the roots DOT2 appears to be require for normal meristem organization and maintenance and the proper expression of PIN and PLT genes. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DEFECTIVELY ORGANIZED TRIBUTARIES 2 (DOT2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 9 processes; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SART-1 protein (InterPro:IPR005011); BEST Arabidopsis thaliana protein match is: SART-1 family (TAIR:AT3G14700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:5517784..5521566 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 94147.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.14 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.42 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 820 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEVEKSKSRH EIREERADYE GSPVREHRDG RRKEKDHRSK DKEKDYDREK IRDKDHRRDK EKERDRKRSR DEDTEKEISR GRDKEREKDK SRDRVKEKDK 101: EKERNRHKDR ENERDNEKEK DKDRARVKER ASKKSHEDDD ETHKAAERYE HSDNRGLNEG GDNVDAASSG KEASALDLQN RILKMREERK KKAEDASDAL 201: SWVARSRKIE EKRNAEKQRA QQLSRIFEEQ DNLNQGENED GEDGEHLSGV KVLHGLEKVV EGGAVILTLK DQSVLTDGDV NNEIDMLENV EIGEQKRRNE 301: AYEAAKKKKG IYDDKFNDDP GAEKKMLPQY DEAATDEGIF LDAKGRFTGE AEKKLEELRK RIQGQTTHTF EDLNSSAKVS SDYFSQEEML KFKKPKKKKQ 401: LRKKDKLDLS MLEAEAVASG LGAEDLGSRK DGRRQAMKEE KERIEYEKRS NAYQEAIAKA DEASRLLRRE QVQPFKRDED ESMVLADDAE DLYKSLEKAR 501: RLALIKKEEA GSGPQAVAHL VASSTNQTTD DNTTTGDETQ ENTVVFTEMG DFVWGLQREN DVRKPESEDV FMEEDVAPKA PVEVKEEHPD GLTEVNDTDM 601: DAAEDSSDTK EITPDENIHE VAVGKGLSGA LKLLKDRGTL KEKVEWGGRN MDKKKSKLVG IVDDDGGKES KDKESKDRFK DIRIERTDEF GRTLTPKEAF 701: RLLSHKFHGK GPGKMKEEKR MKQYQEELKL KQMKNSDTPS QSVQRMREAQ AQLKTPYLVL SGHVKPGQTS DPQSGFATVE KDVPGSLTPM LGDRKVEHFL 801: GIKRKSEPGN SDTPPKRPKP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)