AT5G16740.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.543 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Transmembrane amino acid transporter family protein | ||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT5G02170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:5501044..5502856 | ||||||||||||||||||||||||||||
Molecular Weight (calculated) | 45810.90 Da | ||||||||||||||||||||||||||||
IEP (calculated) | 8.99 | ||||||||||||||||||||||||||||
GRAVY (calculated) | 0.70 | ||||||||||||||||||||||||||||
Length | 426 amino acids | ||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MVCVACVEEN KGCECEHEKP VRELVLEAAS ENSSFLHSVI NMVGMLIGLG QLSMPYAVES GGWMSIFLLI SFGILTTYTS HILGKCIRRN PKSKSYSDIG 101: YSAFGRHGRL IVCLFIYLEI FMALVSYTIS LHDNISAAFP ATFSNHGHFP AAKLTAVAVA IALPSLWIRD LSSISFLSSG GILMSAIIFG SVVYTAIFGG 201: VIDDGKIPVL RLENIPTVSG IYLFSFGGHI VFPNLYTSMK DPSKFTKVSI VSFATVTALY GALAITGAKM FGPSVNSQIT LSLPKHLVVT KIALWATVLT 301: PMTKYALEFA PLAIQLERSL PSTMTDRTKL VARGLMGSAL LLVILALALT VPYFGYVLSL TGSLVSVTIA VTLPSAFYLK ICWDGMTKFT RAANLGFVVL 401: GCVLGVLGSF ESSKLLVKEL VRVHGG |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)