AT5G16340.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 0.893 ASURE: cytosol What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : AMP-dependent synthetase and ligase family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: acyl activating enzyme 5 (TAIR:AT5G16370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:5349255..5350907 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60135.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.68 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.01 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 550 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEEMKPCAAN SPPLTPIGFL ERAATVYGDC TSIVYGSNTV YTWRETNLRC LRVASSLSSI GIGRSDVVSV LSPNTPAMYE LQFAVPMSGA ILNNINTRLD 101: ARTVSVLLRH CESKLLFVDV FSVDLAVEAV SMMTTDPPIL VVIADKEEEG GVADVADLSK FSYTYDDLIE RGDPGFKWIR PESEWDPVVL NYTSGTTSAP 201: KGVVHCHRGI FVMSVDSLID WAVPKNPVYL WTLPIFHSNG WTNPWGIAAV GGTNVCLRKF DAPLIYRLIR DHGVTHMCGA PVVLNMLSAT QESQPLNHPV 301: NILTAGSPPP ATVLLRAESI GFVISHGYGL TETAGVIVSC AWKPKWNHLP ASDRARLKAR QGVRTVGFTE IDVVDPESGL SVERNGETVG EIVMRGSSVM 401: LGYLKDPVGT EKALKNGWFY TGDVGVIHSD GYLEIKDRSK DIIITGGENV SSVEVETVLY TIPAVNEVAV VARPDEFWGE TPCAFVSLKN GFSGKPTEEE 501: LMEYCRKKMP KYMVPKTVSF MDELPKSSTG KVTKFVLRDI AKKMGDKTIS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)