AT5G16240.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Plant stearoyl-acyl-carrier-protein desaturase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Plant stearoyl-acyl-carrier-protein desaturase family protein; FUNCTIONS IN: acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding; INVOLVED IN: oxidation reduction, fatty acid metabolic process, fatty acid biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase-related (InterPro:IPR012348), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Fatty acid desaturase, type 2 (InterPro:IPR005067); BEST Arabidopsis thaliana protein match is: Plant stearoyl-acyl-carrier-protein desaturase family protein (TAIR:AT3G02630.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:+:5306981..5309639 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 45020.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.52 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.50 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 394 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MVMAMDRIAL FSSSSSVYHH GSSHSHGSKS SRVFTIRSDS TAVGRKLYIP PREVHLQVKY SMPPQKLEIF KSLEGWANDN LLAYLKPVEK SWQPTDFLPE 101: PESEGFYDQV KELRERCKEL SDDYLIVLVG DMITEEALPT YQTMINTLDG VRDETGASPT PWAVWTRAWT AEENRHGDLL NKYLYLSGRV DMRQIEKTIQ 201: YLIGSGMDPK TENNPYLGFI YTSFQERATF ISHGNTARLA KDLGDLTLGK ICGTIAADER RHEHAYTKIV EKLFEIDPDT TVVGFADMMR KKISMPAHLM 301: YDGRDDNLFD HFSSVAQRLG VYTAKDYADI LQHLVERWNV EKLSDLSSEG NRAQDYLCGL PARIRKLEER AQGRTKEAAK NIPFSWIFGR EVRA |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)