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AT5G16220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.912
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Octicosapeptide/Phox/Bem1p family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Octicosapeptide/Phox/Bem1p family protein; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: Octicosapeptide/Phox/Bem1p family protein (TAIR:AT2G01190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IW4HeggNOG:ENOG41116B0EMBL:AL391148EMBL:AY062558
EMBL:BT003380EMBL:CP002688EnsemblPlants:AT5G16220EnsemblPlants:AT5G16220.1
entrez:831481GeneID:831481Gramene:AT5G16220.1hmmpanther:PTHR31066
hmmpanther:PTHR31066:SF3HOGENOM:HOG000237480InterPro:IPR000270KEGG:ath:AT5G16220
Pfam:PF00564PhylomeDB:Q9LF06PIR:T51492Proteomes:UP000006548
RefSeq:NP_197126.1SMART:SM00666STRING:3702.AT5G16220.1SUPFAM:SSF54277
TAIR:AT5G16220UniGene:At.27450UniProt:Q9LF06
Coordinates (TAIR10) chr5:-:5298604..5300579
Molecular Weight (calculated) 52313.00 Da
IEP (calculated) 5.56
GRAVY (calculated) -0.51
Length 476 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTVSSAFAT VAEGAKVVTP RWKKNERNGK LRVMCRYGGS IVSPPQTKSP RYVGGDTRIV AIPSSAETSF ASLVSHLTVT LKISYPFKVK YQLPDQELDS
101: LISVEADEDV QIMMEEHGYL SSESSIPQSR IRLFLFPLKS QQSNEAGASQ GDSDQCKVET DIDWLGIEES NKPIREELTQ PVLQHPKTEM WFVDALKSVE
201: MMQTRRTNSG TSGSGDGNGG ICGQESMMLE TNSSFGSTSS SVSSSNLPPI KSSGEDNIAN SQVKFAPIES VTSNDNSAVT PIPSHELPSH SHAFENKPSS
301: NLYVAELNRP VPVPISGYPP FMNQAQQQHI QVIYTGQPYI TGNSPMTLPA TAYHHTNHVY YQRPPQPYPI YYIPVEQYSS RHVQALPVKP STVLNYHQVD
401: SPVVRTSSPL APEFSSQVYP LSKPVDSSVQ TSSEATLNTT SRDAFIYNTD VDDDNDIAHA QIYKSQPPAP TLPSQY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)