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AT5G16050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : general regulatory factor 5
Curator
Summary (TAIR10)
Encodes GF14 upsilon chain, a 14-3-3 gene family member.
Computational
Description (TAIR10)
general regulatory factor 5 (GRF5); FUNCTIONS IN: protein phosphorylated amino acid binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: general regulatory factor 7 (TAIR:AT3G02520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:16738eggNOG:COG5040eggNOG:KOG0841EMBL:AF001415
EMBL:AL391145EMBL:AY035170EMBL:AY059115EMBL:CP002688
EMBL:L09109EnsemblPlants:AT5G16050EnsemblPlants:AT5G16050.1entrez:831462
GeneID:831462Genevisible:P42645GO:GO:0005524GO:GO:0005618
GO:GO:0005634GO:GO:0005739GO:GO:0005794GO:GO:0005829
GO:GO:0005886GO:GO:0046686Gramene:AT5G16050.1hmmpanther:PTHR18860
hmmpanther:PTHR18860:SF27HOGENOM:HOG000240379IntAct:P42645InterPro:IPR000308
InterPro:IPR023409InterPro:IPR023410iPTMnet:P42645KEGG:ath:AT5G16050
KO:K06630MINT:MINT-7147385ncoils:CoilOMA:NSDHVSI
PANTHER:PTHR18860PaxDb:P42645Pfam:P42645Pfam:PF00244
PhylomeDB:P42645PIR:S71173PIR:T51388PIRSF:PIRSF000868
PRIDE:P42645PRINTS:PR00305PRO:PR:P42645PROSITE:PS00796
PROSITE:PS00797ProteinModelPortal:P42645Proteomes:UP000006548Reactome:R-ATH-3371453
Reactome:R-ATH-3371511RefSeq:NP_568325.1scanprosite:PS00796scanprosite:PS00797
SMART:SM00101SMR:P42645STRING:3702.AT5G16050.1SUPFAM:SSF48445
TAIR:AT5G16050tair10-symbols:GF14 UPSILONtair10-symbols:GRF5UniGene:At.25563
UniGene:At.64750UniProt:P42645
Coordinates (TAIR10) chr5:-:5244008..5245402
Molecular Weight (calculated) 30183.50 Da
IEP (calculated) 4.45
GRAVY (calculated) -0.46
Length 268 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSDSSREEN VYLAKLAEQA ERYEEMVEFM EKVAKTVETE ELTVEERNLL SVAYKNVIGA RRASWRIISS IEQKEDSRGN SDHVSIIKDY RGKIETELSK
101: ICDGILNLLE AHLIPAASLA ESKVFYLKMK GDYHRYLAEF KTGAERKEAA ESTLVAYKSA QDIALADLAP THPIRLGLAL NFSVFYYEIL NSSDRACSLA
201: KQAFDEAISE LDTLGEESYK DSTLIMQLLR DNLTLWTSDL NDEAGDDIKE APKEVQKVDE QAQPPPSQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)