AT5G16020.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 ASURE: plasma membrane What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : gamete-expressed 3 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes GEX3, a plasma membrane localized protein expressed in the male gametophyte. Required for micropylar pollen tube guidance. Also plays a role during early embryogenesis. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
gamete-expressed 3 (GEX3); CONTAINS InterPro DOMAIN/s: Quinonprotein alcohol dehydrogenase-like (InterPro:IPR011047); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:5229692..5232241 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73343.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.17 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||
| Length | 641 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVAFRFVYIP LPFFFFFFFF FVFFSGVSQL QDQTATKKSV RILSKILIGD DGRVYACSDN DFFSFESNGS IAWSVHMNFK CNTDFAPVYS GFNQMLLLAE 101: NRILRVIFPR NGTKSEPELF FDPGETILGF AVSVSSSSVY ITVKNHGLYA YNMFRQQLWI AEPKIERFGY RLGCRKDFDN CTFNSRPVID SCEGSIYISN 201: NEGELYSLSL RGTYYQWIQD FSLVDRFFTV TPGNNGLVYV VFPIKSLVFA LDSFSGDILW QKTIGPLAET SASDPVIDSN SWASIGSLDG TLYSFSRTGD 301: LYKIPKNAET DSVIQIEPLL DCSGYAVYVS QTKFEGMIDR VIEDYTYVSA KKPETAVFSL VVPETRSIYW SQSYSDQIPG LLLDEDLQHF VLDERIALAF 401: VAASSSGNPF RCRSKHEKLS SSCSFAEPEH LDIYIGNERA IIWFLLFEFV IMVLFAALVR FCFIFWKKKK LQDRPFSTFL DKRRLLHRKS REIDKTITRL 501: QNESTANESA VDKIGDLIQK RENVKRKLSS TYSLGRDIDE SKSKLKDYVL PLYGGSSRSF SYRNRENESI TIFQTPSDES SSEESYRDEH YDDVADDEHD 601: EDDLDRKQKG KLLAHSEGSS NDGDGIASSR RSIYLKHIFD D |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)